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Os04g0611400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Vacuolar sorting receptor 7 precursor (AtVSR7) (Epidermal growth factor receptor-like protein 3) (AtELP3) (BP80-like protein f) (AtBP80f).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.045) R2 : 0.706
β1 : 2.03 (0.219) R2dD : 0.104 R2D : 0.245
β2 : 0.944 (0.104) R2dC : 0.0551 R2C : 0.0557
β3 : 2.9 (0.219) R2dE : 0.223 R2E : 0.472
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.09 (0.104) R2dN8 : 0.11 R2N8 : 0.12
σ : 0.82
deviance : 309.97
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C
peak time of C : 0.4
E
wheather : temperature
threshold : 18.69
memory length : 4326
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.9
open length of G : 1.47

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
304.31 0.82 11.9 2.4 0.947 0.604 -0.214 -5.66 1.08 0.301 20.3 4105 19.1 1.93
311.54 0.822 11.8 2.17 0.904 2.6 -0.343 -- 1.06 0.505 18.69 4319 21 1.42
304.24 0.812 11.9 2.4 0.954 0.605 -- -5.65 1.08 0.281 20.3 4061 19.1 1.9
309.97 0.82 11.8 2.03 0.944 2.9 -- -- 1.09 0.4 18.69 4326 20.9 1.47
339.77 0.858 11.9 2.29 -- 1.41 -- -5.19 1.06 -- 20.5 3467 18.3 2.95
426.89 0.969 11.6 3.96 1.03 -- -0.6 -- 1.7 0.891 -- -- -- --
428.31 0.969 11.6 3.98 1.03 -- -- -- 1.71 0.73 -- -- -- --
351.12 0.873 11.7 2.47 -- 2.94 -- -- 1.28 -- 19.21 4896 18.4 2.38
359.34 0.883 11.9 -- 0.931 3.95 -- -- 0.53 0.446 17.78 47520 20.4 0.25
494.73 1.04 11.6 4.02 -- -- -- -- 1.72 -- -- -- -- --
846.8 1.36 11.7 -- 1.09 -- -- -- 1.26 0.899 -- -- -- --
416.58 0.951 11.8 -- -- 4 -- -- 0.535 -- 17.75 47520 20.4 0.0158
921.42 1.42 11.7 -- -- -- -- -- 1.28 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 311.87 temperature 20 4320 > th dose independent rect. 19 2
12 317.88 temperature 20 4320 < th dose independent rect. 19 3
15 318.91 temperature 20 4320 < th dose independent rect. 18 5
51 325.76 humidity 90 14400 > th dose dependent rect. 2 14
100 329.43 temperature 20 4320 > th dose independent sin 15 NA
105 329.62 humidity 90 14400 > th dose dependent sin 3 NA
135 331.37 temperature 20 4320 < th dose independent sin 15 NA
136 331.40 wind 9 43200 > th dose independent rect. 16 4
145 331.72 wind 9 43200 < th dose independent rect. 16 4
147 331.76 wind 7 43200 > th dose independent rect. 18 2
156 331.94 wind 7 43200 > th dose dependent rect. 18 2
169 332.61 temperature 20 4320 < th dose dependent rect. 22 1
187 333.24 wind 1 14400 > th dose independent rect. 23 3
192 333.33 wind 1 14400 < th dose independent rect. 23 3
193 333.39 humidity 90 14400 > th dose dependent rect. 5 2
258 335.12 temperature 20 4320 > th dose independent rect. 16 18
265 335.17 temperature 20 1440 < th dose independent sin 11 NA
272 335.29 radiation 1 14400 < th dose independent rect. 11 1
274 335.29 radiation 1 14400 < th dose dependent rect. 11 1
282 335.41 temperature 20 1440 > th dose independent sin 11 NA
291 335.46 radiation 1 14400 > th dose independent rect. 11 1
294 335.49 temperature 20 1440 < th dose independent rect. 22 12
305 335.65 temperature 20 1440 > th dose independent rect. 21 13
309 335.70 temperature 20 4320 < th dose independent rect. 17 18
332 335.83 humidity 90 14400 > th dose independent rect. 23 17
345 335.98 temperature 20 1440 > th dose independent rect. 19 15
375 336.19 humidity 60 43200 < th dose independent rect. 20 13
379 336.20 temperature 20 4320 < th dose dependent rect. 20 4
380 336.21 humidity 60 43200 > th dose independent rect. 20 13
399 336.31 temperature 20 4320 > th dose independent rect. 6 22
414 336.41 wind 9 14400 > th dose independent rect. 23 1
430 336.47 wind 9 14400 > th dose dependent rect. 23 1
460 336.61 temperature 20 1440 < th dose independent rect. 22 16
499 336.81 humidity 90 14400 > th dose independent rect. 5 2
500 336.81 temperature 20 1440 > th dose independent rect. 21 17
510 336.86 wind 1 14400 > th dose independent rect. 24 1
569 337.18 wind 7 43200 < th dose independent rect. 18 2
580 337.27 temperature 20 4320 > th dose independent rect. 2 22
581 337.27 temperature 20 4320 < th dose independent rect. 6 22
635 337.54 temperature 20 4320 > th dose independent no NA NA
708 337.91 temperature 20 4320 < th dose independent rect. 2 22
722 337.97 temperature 20 4320 < th dose independent rect. 5 19
744 338.09 humidity 60 43200 > th dose dependent rect. 19 4
748 338.10 humidity 70 43200 < th dose dependent rect. 21 12
767 338.21 wind 9 14400 < th dose independent rect. 23 1
771 338.22 temperature 20 4320 < th dose independent no NA NA
772 338.23 wind 9 43200 < th dose independent rect. 16 1
833 338.59 humidity 60 43200 > th dose dependent rect. 18 6
884 338.93 temperature 20 4320 < th dose independent rect. 22 23
890 338.98 temperature 15 4320 > th dose dependent rect. 20 1
929 339.22 wind 1 43200 < th dose dependent rect. 5 20
990 339.67 wind 1 14400 < th dose independent rect. 24 1