Os12g0116000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PV72.
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Os12g0116000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PV72.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.71 | 0.292 | 8.24 | -1.22 | 0.02 | -0.924 | 0.661 | -2.05 | -0.482 | 5.4 | 29.49 | 94 | -- | -- |
| 42.79 | 0.307 | 8.28 | -1.55 | 0.0223 | -1.02 | 0.464 | -- | -0.539 | 9.78 | 153.2 | 18 | -- | -- |
| 39.65 | 0.293 | 8.25 | -1.27 | 0.0235 | -0.915 | -- | -1.74 | -0.496 | 5.65 | 29.56 | 94 | -- | -- |
| 43.21 | 0.306 | 8.27 | -1.54 | 0.0716 | -0.82 | -- | -- | -0.553 | 11.9 | 30.19 | 138 | -- | -- |
| 39.66 | 0.293 | 8.25 | -1.26 | -- | -0.892 | -- | -1.74 | -0.493 | -- | 29.36 | 91 | -- | -- |
| 51.78 | 0.337 | 8.25 | -1.35 | 0.33 | -- | 0.406 | -- | -0.397 | 14 | -- | -- | -- | -- |
| 52.38 | 0.339 | 8.25 | -1.34 | 0.333 | -- | -- | -- | -0.394 | 14.3 | -- | -- | -- | -- |
| 43.5 | 0.307 | 8.29 | -1.56 | -- | -0.905 | -- | -- | -0.564 | -- | 30.4 | 95 | -- | -- |
| 98.93 | 0.466 | 8.22 | -- | 0.295 | -0.227 | -- | -- | -0.273 | 14.4 | 85.22 | 122 | -- | -- |
| 58.98 | 0.359 | 8.25 | -1.35 | -- | -- | -- | -- | -0.403 | -- | -- | -- | -- | -- |
| 99.48 | 0.467 | 8.21 | -- | 0.359 | -- | -- | -- | -0.246 | 14.4 | -- | -- | -- | -- |
| 102.42 | 0.473 | 8.23 | -- | -- | -0.559 | -- | -- | -0.315 | -- | 126 | 5 | -- | -- |
| 107.11 | 0.483 | 8.21 | -- | -- | -- | -- | -- | -0.253 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 5 | 35.50 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 68 | 36.25 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 76 | 36.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 105 | 36.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 163 | 37.06 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 174 | 37.22 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 210 | 37.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 311 | 38.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 321 | 38.41 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 322 | 38.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 339 | 38.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 367 | 38.61 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 370 | 38.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 371 | 38.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 375 | 38.63 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 392 | 38.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 395 | 38.74 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 400 | 38.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 403 | 38.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 408 | 38.77 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 410 | 38.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 420 | 38.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 425 | 38.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 435 | 38.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 446 | 38.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 455 | 38.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 469 | 38.92 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 496 | 38.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 519 | 39.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 537 | 39.10 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 538 | 39.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 596 | 39.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 597 | 39.19 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 620 | 39.22 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 626 | 39.23 | radiation | 20 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 666 | 39.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 671 | 39.27 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 679 | 39.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 690 | 39.30 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 706 | 39.32 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 809 | 39.42 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 815 | 39.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 834 | 39.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 844 | 39.46 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 851 | 39.47 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 852 | 39.47 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 854 | 39.47 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 876 | 39.49 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 891 | 39.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 926 | 39.54 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 954 | 39.57 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 987 | 39.60 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 1 |