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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0190700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0549) R2 : 0.659
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 3.43 (0.115) R2dN8 : 0.852 R2N8 : 0.659
σ : 1.03
deviance : 489.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
462.45 1.01 3.13 -0.159 0.394 -0.883 -0.155 -0.214 3.38 2.7 71 566 -- --
462.5 1 3.13 -0.173 0.395 -0.899 -0.198 -- 3.38 2.78 70.83 568 -- --
462.52 1 3.13 -0.152 0.392 -0.885 -- -0.273 3.38 2.69 71 568 -- --
462.62 1 3.13 -0.171 0.393 -0.902 -- -- 3.38 2.74 70.93 568 -- --
465.33 1 3.13 -0.125 -- -0.856 -- -0.335 3.39 -- 74.11 810 -- --
477.11 1.02 3.13 -0.0583 0.466 -- 0.186 -- 3.43 21.2 -- -- -- --
477.22 1.02 3.13 -0.0654 0.465 -- -- -- 3.43 21.3 -- -- -- --
465.5 1 3.13 -0.15 -- -0.857 -- -- 3.38 -- 74.17 810 -- --
463.38 1 3.13 -- 0.38 -0.874 -- -- 3.4 2.6 70.92 568 -- --
489.82 1.03 3.12 -0.0632 -- -- -- -- 3.43 -- -- -- -- --
477.34 1.02 3.13 -- 0.464 -- -- -- 3.43 21.3 -- -- -- --
466.08 1.01 3.13 -- -- -0.846 -- -- 3.4 -- 74.38 810 -- --
489.92 1.03 3.12 -- -- -- -- -- 3.43 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 456.33 wind 3.0 10 > th dose dependent rect. 18 1
2 457.60 atmosphere 1005.0 10 > th dose independent rect. 3 1
3 457.95 radiation 1.0 43200 < th dose dependent rect. 3 1
4 458.38 atmosphere 1005.0 720 < th dose independent rect. 16 2
6 458.71 wind 5.0 10 > th dose independent rect. 18 1
9 460.45 radiation 1.0 4320 < th dose dependent rect. 3 1
14 460.75 humidity 80.0 10 < th dose independent rect. 1 5
21 460.76 humidity 80.0 10 < th dose dependent rect. 2 4
39 460.78 wind 9.0 1440 < th dose independent rect. 3 1
40 460.78 temperature 10.0 1440 > th dose independent rect. 3 1
43 460.78 temperature 30.0 1440 < th dose independent rect. 3 1
47 460.78 humidity 50.0 1440 > th dose independent rect. 3 1
56 460.78 atmosphere 995.0 1440 > th dose independent rect. 3 1
57 460.78 radiation 1.0 1440 < th dose independent rect. 3 1
77 460.78 temperature 10.0 1440 > th dose independent rect. 4 23
89 460.80 humidity 80.0 10 < th dose independent rect. 5 1
119 461.47 temperature 20.0 720 > th dose dependent rect. 16 1
120 461.80 wind 3.0 10 < th dose dependent rect. 3 1
122 461.87 wind 3.0 10 > th dose dependent rect. 14 5
123 461.97 temperature 25.0 4320 > th dose dependent rect. 4 1
125 462.28 radiation 1.0 90 > th dose independent rect. 4 1
135 462.28 radiation 1.0 90 > th dose dependent rect. 4 1
145 462.37 radiation 10.0 720 < th dose dependent rect. 4 19
168 462.54 wind 1.0 720 < th dose dependent rect. 13 1
170 462.65 radiation 10.0 720 > th dose independent rect. 16 19
172 462.94 radiation 20.0 720 > th dose dependent rect. 16 15
178 463.12 radiation 20.0 720 > th dose dependent rect. 16 1
192 463.12 radiation 10.0 720 < th dose dependent rect. 4 21
195 463.14 humidity 70.0 720 > th dose independent rect. 19 2
196 463.18 humidity 90.0 720 < th dose dependent rect. 16 1
198 463.23 radiation 10.0 720 > th dose independent rect. 16 21
199 463.27 radiation 10.0 720 > th dose independent rect. 16 16
201 463.29 atmosphere 1005.0 720 > th dose independent rect. 17 1
203 463.34 humidity 70.0 720 > th dose independent rect. 10 21
204 463.37 humidity 50.0 720 < th dose independent rect. 16 1
205 463.37 radiation 1.0 720 < th dose dependent rect. 6 17
206 463.42 radiation 1.0 720 > th dose dependent rect. 16 1
207 463.47 humidity 70.0 720 > th dose independent rect. 13 18
208 463.48 humidity 70.0 720 > th dose independent rect. 19 10
216 463.69 humidity 70.0 720 > th dose independent rect. 18 22
218 463.73 wind 3.0 10 > th dose independent rect. 14 5
219 463.73 radiation 1.0 30 > th dose dependent rect. 18 12
232 463.79 radiation 30.0 270 > th dose independent rect. 14 19
235 463.80 humidity 70.0 720 > th dose independent rect. 19 4
236 463.80 humidity 80.0 720 > th dose independent rect. 4 18
240 463.83 radiation 1.0 720 > th dose dependent rect. 16 3
254 463.85 temperature 10.0 720 > th dose dependent rect. 16 3
255 463.86 humidity 70.0 720 > th dose dependent rect. 4 13
256 463.87 radiation 40.0 1440 > th dose dependent rect. 14 19
258 463.89 atmosphere 1005.0 30 < th dose independent rect. 18 1
261 463.92 humidity 50.0 720 < th dose dependent rect. 16 1
266 463.97 wind 3.0 10 > th dose independent rect. 16 3
267 463.97 radiation 1.0 720 < th dose dependent rect. 12 11
271 463.99 radiation 10.0 720 < th dose independent rect. 4 3
278 464.08 humidity 70.0 720 > th dose independent rect. 10 13
284 464.11 radiation 10.0 270 > th dose dependent rect. 14 19
292 464.20 atmosphere 995.0 10 > th dose dependent rect. 3 1
294 464.22 radiation 40.0 1440 > th dose dependent rect. 14 1
295 464.24 radiation 1.0 720 < th dose independent rect. 4 19
296 464.25 humidity 80.0 720 > th dose independent rect. 2 20
297 464.25 radiation 20.0 720 < th dose dependent rect. 13 19
299 464.26 humidity 70.0 90 > th dose independent rect. 4 22
305 464.28 temperature 20.0 90 < th dose dependent rect. 4 1
307 464.29 wind 1.0 720 < th dose independent rect. 13 1
311 464.30 radiation 10.0 720 > th dose independent sin 12 NA
312 464.31 humidity 80.0 720 > th dose independent rect. 4 13
333 464.32 humidity 70.0 720 > th dose independent rect. 13 10
346 464.43 radiation 10.0 720 < th dose dependent rect. 19 23
362 464.54 wind 3.0 90 > th dose dependent rect. 14 5
364 464.55 humidity 80.0 720 < th dose independent rect. 16 1
365 464.55 humidity 80.0 720 < th dose independent rect. 6 16
369 464.57 humidity 70.0 720 > th dose independent rect. 19 12
371 464.58 humidity 70.0 720 > th dose dependent rect. 4 16
378 464.62 radiation 1.0 720 > th dose independent rect. 16 1
388 464.67 radiation 40.0 720 < th dose dependent rect. 14 17
394 464.69 humidity 70.0 720 < th dose independent rect. 14 21
402 464.71 wind 5.0 270 > th dose independent rect. 12 5
410 464.72 radiation 20.0 720 < th dose dependent rect. 4 3
436 464.78 humidity 70.0 720 > th dose independent rect. 24 23
447 464.82 humidity 70.0 720 > th dose independent rect. 13 23
455 464.85 humidity 60.0 10 > th dose dependent rect. 4 23
464 464.90 radiation 1.0 720 < th dose independent rect. 4 21
465 464.90 radiation 10.0 720 < th dose dependent rect. 4 13
468 464.90 radiation 10.0 720 < th dose dependent rect. 10 22
488 464.96 radiation 10.0 720 < th dose dependent sin 13 NA
529 465.11 humidity 90.0 10 > th dose independent rect. 3 1
558 465.21 wind 3.0 10 < th dose independent rect. 3 1
570 465.24 humidity 70.0 270 < th dose independent rect. 14 2
573 465.24 radiation 40.0 1440 > th dose dependent rect. 13 21
575 465.24 radiation 1.0 270 > th dose dependent rect. 13 22
590 465.29 humidity 70.0 720 > th dose independent no NA NA
595 465.31 radiation 10.0 720 > th dose independent sin 5 NA
613 465.34 humidity 70.0 720 > th dose independent sin 17 NA
620 465.36 radiation 30.0 270 > th dose independent rect. 14 2
656 465.39 radiation 10.0 720 > th dose independent rect. 6 12
671 465.40 radiation 10.0 720 > th dose independent no NA NA
741 465.41 radiation 1.0 720 > th dose independent rect. 16 14
749 465.42 precipitation 0.1 10 < th dose independent rect. 3 1
751 465.42 precipitation 0.1 10 < th dose dependent rect. 3 1
752 465.43 temperature 25.0 10 < th dose independent rect. 3 1
775 465.48 atmosphere 1005.0 30 > th dose dependent rect. 5 1
784 465.50 humidity 80.0 10 > th dose dependent rect. 3 1
830 465.60 atmosphere 1005.0 30 > th dose independent rect. 24 1
854 465.65 wind 1.0 10 > th dose independent rect. 2 2
880 465.66 humidity 80.0 720 > th dose independent rect. 19 15
883 465.66 temperature 10.0 720 > th dose dependent rect. 7 12
892 465.67 humidity 60.0 90 > th dose dependent rect. 4 22
893 465.68 radiation 20.0 720 > th dose independent rect. 16 1
915 465.69 wind 7.0 1440 > th dose independent rect. 22 1
922 465.69 temperature 20.0 10 > th dose dependent rect. 3 1
944 465.72 radiation 10.0 270 > th dose dependent sin 13 NA
949 465.73 humidity 80.0 720 > th dose independent sin 1 NA
953 465.73 temperature 15.0 90 > th dose independent rect. 19 14
958 465.74 radiation 30.0 270 > th dose independent sin 13 NA
966 465.75 radiation 1.0 720 > th dose independent rect. 16 3
973 465.75 wind 9.0 90 < th dose independent rect. 9 10
976 465.75 humidity 80.0 720 < th dose independent rect. 6 12
1000 465.77 temperature 20.0 90 > th dose independent rect. 9 10