FiT-DB / Search/ Help/ Sample detail
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Os07g0680000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth factor receptor-like protein 1) (AtELP1) (AtELP) (BP80-like protein b) (AtBP80b) (Spot 3 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.5 | 0.403 | 7.83 | 0.309 | 2.19 | 0.805 | -0.787 | -0.878 | 0.284 | 0.898 | 20.4 | 1473 | -- | -- |
| 75.29 | 0.404 | 7.81 | 0.346 | 2.18 | 0.932 | -0.829 | -- | 0.288 | 0.902 | 20.3 | 2953 | -- | -- |
| 75.79 | 0.405 | 7.82 | 0.332 | 2.17 | 0.791 | -- | -0.908 | 0.295 | 0.858 | 20.5 | 1381 | -- | -- |
| 77.86 | 0.411 | 7.81 | 0.347 | 2.18 | 0.957 | -- | -- | 0.278 | 0.858 | 20.15 | 2880 | -- | -- |
| 358.18 | 0.881 | 7.81 | 0.176 | -- | 1.2 | -- | -0.748 | 0.23 | -- | 20.3 | 2459 | -- | -- |
| 93.11 | 0.452 | 7.75 | 0.845 | 2.2 | -- | -0.828 | -- | 0.522 | 0.935 | -- | -- | -- | -- |
| 95.96 | 0.459 | 7.75 | 0.876 | 2.2 | -- | -- | -- | 0.527 | 0.893 | -- | -- | -- | -- |
| 307.01 | 0.816 | 7.88 | 0.305 | -- | 1.53 | -- | -- | 0.151 | -- | 25.2 | 941 | -- | -- |
| 80.18 | 0.417 | 7.82 | -- | 2.17 | 1.16 | -- | -- | 0.25 | 0.808 | 20 | 2968 | -- | -- |
| 398.8 | 0.933 | 7.72 | 0.958 | -- | -- | -- | -- | 0.568 | -- | -- | -- | -- | -- |
| 116.19 | 0.504 | 7.77 | -- | 2.22 | -- | -- | -- | 0.429 | 0.91 | -- | -- | -- | -- |
| 306.42 | 0.815 | 7.87 | -- | -- | 1.75 | -- | -- | -0.0957 | -- | 25.5 | 983 | -- | -- |
| 422.99 | 0.96 | 7.74 | -- | -- | -- | -- | -- | 0.462 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 14 |
| 3 | 68.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 14 |
| 11 | 68.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 12 | 68.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 20 | 68.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 21 | 69.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 47 | 69.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 107 | 70.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 108 | 70.75 | temperature | 30 | 270 | < th | dose dependent | sin | 18 | NA |
| 139 | 70.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 173 | 71.26 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 174 | 71.26 | temperature | 10 | 270 | > th | dose dependent | sin | 17 | NA |
| 201 | 71.45 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 304 | 72.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 4 |
| 312 | 72.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 336 | 72.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 16 |
| 351 | 72.29 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 378 | 72.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 457 | 72.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 6 |
| 550 | 72.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 596 | 72.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 633 | 73.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 643 | 73.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 657 | 73.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 680 | 73.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 2 |
| 688 | 73.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 6 |
| 940 | 73.54 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 986 | 73.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 993 | 73.62 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
