Os10g0346600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vacuolar sorting receptor 4 precursor (AtVSR4) (Epidermal growth factor receptor-like protein 2b) (AtELP2b) (BP80-like protein a) (AtBP80a).
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Os10g0346600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vacuolar sorting receptor 4 precursor (AtVSR4) (Epidermal growth factor receptor-like protein 2b) (AtELP2b) (BP80-like protein a) (AtBP80a).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.52 | 0.185 | 12.9 | 0.374 | 0.269 | -0.256 | -0.0423 | -0.168 | 0.229 | 23.1 | 24.9 | 250 | -- | -- |
| 15.63 | 0.184 | 12.9 | 0.347 | 0.271 | -0.26 | -0.0299 | -- | 0.218 | 23.1 | 24.8 | 249 | -- | -- |
| 15.52 | 0.184 | 12.9 | 0.376 | 0.269 | -0.256 | -- | -0.172 | 0.229 | 23.1 | 24.9 | 249 | -- | -- |
| 15.62 | 0.184 | 12.9 | 0.328 | 0.273 | -0.261 | -- | -- | 0.213 | 23.1 | 24.89 | 246 | -- | -- |
| 18.56 | 0.201 | 12.9 | 0.326 | -- | -0.33 | -- | -0.0838 | 0.209 | -- | 24.9 | 536 | -- | -- |
| 19.28 | 0.206 | 12.8 | 0.404 | 0.305 | -- | -0.0307 | -- | 0.345 | 20.9 | -- | -- | -- | -- |
| 19.29 | 0.206 | 12.8 | 0.405 | 0.305 | -- | -- | -- | 0.345 | 20.9 | -- | -- | -- | -- |
| 18.59 | 0.201 | 12.9 | 0.304 | -- | -0.334 | -- | -- | 0.206 | -- | 24.83 | 538 | -- | -- |
| 18.21 | 0.199 | 12.9 | -- | 0.276 | -0.318 | -- | -- | 0.154 | 23.6 | 24.73 | 265 | -- | -- |
| 24.59 | 0.232 | 12.8 | 0.405 | -- | -- | -- | -- | 0.342 | -- | -- | -- | -- | -- |
| 23.61 | 0.227 | 12.8 | -- | 0.304 | -- | -- | -- | 0.299 | 21 | -- | -- | -- | -- |
| 20.92 | 0.213 | 12.9 | -- | -- | -0.381 | -- | -- | 0.16 | -- | 24.9 | 561 | -- | -- |
| 28.92 | 0.251 | 12.8 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 14 | 15.37 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 22 |
| 19 | 15.46 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 22 |
| 30 | 15.53 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 37 | 15.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 42 | 15.57 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 22 |
| 73 | 15.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 78 | 15.64 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 93 | 15.68 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 23 |
| 96 | 15.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 97 | 15.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 98 | 15.69 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 16 |
| 105 | 15.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 111 | 15.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 112 | 15.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 123 | 15.73 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 142 | 15.75 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 149 | 15.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 163 | 15.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 167 | 15.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 182 | 15.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 214 | 15.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 222 | 15.85 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 21 |
| 243 | 15.87 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 23 |
| 244 | 15.87 | temperature | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 250 | 15.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 8 | 23 |
| 251 | 15.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 254 | 15.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 258 | 15.88 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 294 | 15.91 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 298 | 15.91 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 304 | 15.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 346 | 15.95 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 448 | 16.02 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 453 | 16.02 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 23 |
| 473 | 16.04 | temperature | 25 | 270 | > th | dose independent | sin | 8 | NA |
| 528 | 16.07 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 620 | 16.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 635 | 16.13 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 692 | 16.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 743 | 16.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 4 |
| 764 | 16.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 802 | 16.19 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 880 | 16.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 942 | 16.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 977 | 16.25 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |