Os06g0664300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d).
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Os06g0664300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.86 | 0.348 | 12.7 | 0.229 | 0.351 | 0.927 | 0.241 | -2.34 | 0.472 | 13.7 | 20.92 | 4428 | -- | -- |
| 58.01 | 0.355 | 12.6 | 0.682 | 0.364 | 0.998 | 0.216 | -- | 0.477 | 13.6 | 16.57 | 7292 | -- | -- |
| 55.08 | 0.346 | 12.7 | 0.228 | 0.351 | 0.933 | -- | -2.35 | 0.469 | 13.6 | 20.9 | 4412 | -- | -- |
| 57.91 | 0.354 | 12.6 | 0.71 | 0.334 | 1.1 | -- | -- | 0.537 | 13.6 | 12.11 | 7334 | -- | -- |
| 59.38 | 0.361 | 12.6 | 0.883 | -- | 1.06 | -- | -1.12 | 0.604 | -- | 20.9 | 4412 | -- | -- |
| 78.09 | 0.414 | 12.5 | 1.27 | 0.314 | -- | 0.219 | -- | 0.823 | 13.7 | -- | -- | -- | -- |
| 78.27 | 0.414 | 12.5 | 1.27 | 0.313 | -- | -- | -- | 0.824 | 13.5 | -- | -- | -- | -- |
| 60.27 | 0.363 | 12.6 | 1.04 | -- | 1.14 | -- | -- | 0.647 | -- | 16.99 | 4643 | -- | -- |
| 63.2 | 0.37 | 12.6 | -- | 0.345 | 1.33 | -- | -- | 0.313 | 13.3 | 10.05 | 22197 | -- | -- |
| 84.26 | 0.429 | 12.5 | 1.26 | -- | -- | -- | -- | 0.817 | -- | -- | -- | -- | -- |
| 121.03 | 0.515 | 12.6 | -- | 0.29 | -- | -- | -- | 0.682 | 13.4 | -- | -- | -- | -- |
| 70.02 | 0.39 | 12.7 | -- | -- | 1.36 | -- | -- | 0.292 | -- | 11.2 | 20477 | -- | -- |
| 126.22 | 0.524 | 12.6 | -- | -- | -- | -- | -- | 0.678 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.35 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 4 | 49.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 34 | 51.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 76 | 52.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 85 | 52.56 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 161 | 53.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 212 | 53.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 231 | 54.00 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 288 | 54.26 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 298 | 54.29 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 16 |
| 303 | 54.31 | temperature | 20 | 4320 | > th | dose dependent | sin | 7 | NA |
| 333 | 54.38 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 354 | 54.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 498 | 54.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 573 | 54.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 7 |
| 629 | 54.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 687 | 54.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 4 |
| 707 | 55.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 736 | 55.02 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 747 | 55.03 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 7 |
| 752 | 55.03 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 5 |
| 767 | 55.05 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 774 | 55.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 775 | 55.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 791 | 55.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 798 | 55.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 806 | 55.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 807 | 55.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 810 | 55.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 811 | 55.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 812 | 55.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 4 |
| 922 | 55.20 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 940 | 55.22 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 941 | 55.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 11 |
| 973 | 55.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 977 | 55.25 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 999 | 55.27 | temperature | 25 | 4320 | > th | dose independent | sin | 2 | NA |