BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0175700 Os11g0175700|AB071804
(419 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0175700 Similar to Transcription factor PCF3 (Fragment) 378 e-105
Os12g0173333 TCP transcription factor family protein 172 3e-43
Os02g0747400 Similar to PCF1 134 1e-31
Os06g0226700 Similar to PCF1 131 8e-31
Os01g0924400 Similar to Auxin-induced basic helix-loop-heli... 127 2e-29
Os08g0544800 PCF2 121 8e-28
Os02g0828566 TCP transcription factor family protein 121 1e-27
Os09g0521300 115 7e-26
Os04g0526000 Similar to Auxin-induced basic helix-loop-heli... 111 1e-24
Os04g0194600 Similar to PCF1 111 1e-24
Os02g0635800 TCP transcription factor family protein 108 6e-24
Os02g0641100 87 2e-17
Os01g0594401 84 2e-16
>Os11g0175700 Similar to Transcription factor PCF3 (Fragment)
Length = 419
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/362 (59%), Positives = 214/362 (59%)
Query: 58 PFYYAAAQGGANTMPAPASFMGSLAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 117
PFYYAAAQGGANTMPAPASFMGSLAI
Sbjct: 58 PFYYAAAQGGANTMPAPASFMGSLAIVPAAAAPGGGGGQVQAAAAPVASSEKKAVVAAGA 117
Query: 118 XXXRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAA 177
RPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAA
Sbjct: 118 GAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAA 177
Query: 178 TGTGTIPANXXXXXXXXXXXXXXXXXXXXXXXXHLQQQQQHDVAAMLGFXXXXXXXXXXX 237
TGTGTIPAN HLQQQQQHDVAAMLGF
Sbjct: 178 TGTGTIPANFSSLAVSLRSAASHSSSPRAAPFHHLQQQQQHDVAAMLGFHHHHHQLLPPP 237
Query: 238 XXXXXXXXTPQDPGAGEFMRKRYREADDLFKDTSRQDPVDGATGEXXXXXXXXXXXXXXX 297
TPQDPGAGEFMRKRYREADDLFKDTSRQDPVDGATGE
Sbjct: 238 PPHQHPEPTPQDPGAGEFMRKRYREADDLFKDTSRQDPVDGATGEAEQKARAAAAAAAPP 297
Query: 298 XXXXXXXXXVGPNTTGATAAFWMQPAWAFPHXXXXXXXXNTVQAPLQFMSRSSFPTAMNV 357
VGPNTTGATAAFWMQPAWAFPH NTVQAPLQFMSRSSFPTAMNV
Sbjct: 298 PTAPSAMWAVGPNTTGATAAFWMQPAWAFPHGAGAGAAGNTVQAPLQFMSRSSFPTAMNV 357
Query: 358 TMADXXXXXXXXXXXXXXXXXXXXXXXXEHQHQHEGQSPAEMDHQRRXXXXXXXXXXXXS 417
TMAD EHQHQHEGQSPAEMDHQRR S
Sbjct: 358 TMADNNNSSNNNLGMLAALNAGGGGRSGEHQHQHEGQSPAEMDHQRRANGGGGEAGGAAS 417
Query: 418 SQ 419
SQ
Sbjct: 418 SQ 419
>Os12g0173333 TCP transcription factor family protein
Length = 418
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 129/265 (48%), Gaps = 38/265 (14%)
Query: 121 RPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGT 180
RP+KDRHTKV+GRGRRIRMPALCAARVFQLTRELGHK+DGETIEWLLQQAEPAI+AATGT
Sbjct: 107 RPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGT 166
Query: 181 GTIPANXXXXXXXXXXXXXXXXXXXXXXXXH-------LQQQQQHDVAAMLGFXXXXXXX 233
GTIPAN QQHDV+AMLG+
Sbjct: 167 GTIPANFSSLNISIRSGAASASSASNPNRASPFPALALHPHHQQHDVSAMLGYHHHLLPP 226
Query: 234 XXXXXXXXXXXXTPQDPGAGEFMRKRYREADDLFK-DTSRQDPVDGATGEXXXXXXXXXX 292
GAG FMRKRYRE DLFK D RQDP +
Sbjct: 227 PQQQQESPQDPG-----GAGAFMRKRYRE--DLFKEDDDRQDP----SAPKAREQQPTTP 275
Query: 293 XXXXXXXXXXXXXXVGPNTTGATAAFWM---------------QPAWAFPHXXXXXXXXN 337
V PNT AFWM QP W+F
Sbjct: 276 QAAAAAAAAAAMWAVAPNTAAPGGAFWMLPVSASSAAAARPTEQPMWSF---AGGGGGAA 332
Query: 338 TVQAPLQFMS-RSSFPTAMNVTMAD 361
TVQAPLQFMS R ++P + M+D
Sbjct: 333 TVQAPLQFMSTRVNYPGSAGAGMSD 357
>Os02g0747400 Similar to PCF1
Length = 410
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/64 (96%), Positives = 64/64 (100%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPA++AATGTGT
Sbjct: 73 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 132
Query: 183 IPAN 186
IPAN
Sbjct: 133 IPAN 136
>Os06g0226700 Similar to PCF1
Length = 387
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 60/64 (93%), Positives = 64/64 (100%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
TKDRHTKV+GRGRRIRMPA+CAARVFQLTRELGHKTDGETIEWLLQQAEPA++AATGTGT
Sbjct: 59 TKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 118
Query: 183 IPAN 186
IPAN
Sbjct: 119 IPAN 122
>Os01g0924400 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 317
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/64 (89%), Positives = 63/64 (98%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
KDRHTKV+GRGRRIRMPALCAAR+FQLTRELGHK+DGET++WLLQQAEPAIVAATGTGT
Sbjct: 87 NKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGT 146
Query: 183 IPAN 186
IPA+
Sbjct: 147 IPAS 150
>Os08g0544800 PCF2
Length = 373
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 60/63 (95%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
+DRHTKVEGRGRRIRMPA CAAR+FQLTRELGHK+DGETI WLLQQ+EPAI+AATGTGT
Sbjct: 75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGT 134
Query: 183 IPA 185
+PA
Sbjct: 135 VPA 137
>Os02g0828566 TCP transcription factor family protein
Length = 236
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/64 (82%), Positives = 62/64 (96%)
Query: 122 PTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTG 181
P+KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHK+DG+TIEWLL+QAEP+I+AATGTG
Sbjct: 36 PSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTG 95
Query: 182 TIPA 185
T PA
Sbjct: 96 TTPA 99
>Os09g0521300
Length = 381
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 51/63 (80%), Positives = 57/63 (90%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
+DRH KVEGRGRRIRMP CAAR+ QLTRELGHK+DGETI WL+QQ+EPAIVAATGTGT
Sbjct: 125 NRDRHVKVEGRGRRIRMPVNCAARIAQLTRELGHKSDGETIRWLMQQSEPAIVAATGTGT 184
Query: 183 IPA 185
+PA
Sbjct: 185 VPA 187
>Os04g0526000 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 206
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/62 (79%), Positives = 58/62 (93%)
Query: 124 KDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTI 183
KDRH+KV GRGRR+RMP +CAARVFQLTRELG K+DG+TIEWLL+QAEP+I+AATG+GT
Sbjct: 56 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTT 115
Query: 184 PA 185
PA
Sbjct: 116 PA 117
>Os04g0194600 Similar to PCF1
Length = 176
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 57/62 (91%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
+ DRH+KV GRGRR+R+PA+ AARVFQLTRELGH+TDGETIEWLL+QAEP+I+AATGTG
Sbjct: 49 SSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
Query: 183 IP 184
P
Sbjct: 109 TP 110
>Os02g0635800 TCP transcription factor family protein
Length = 211
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 57/61 (93%)
Query: 125 DRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIP 184
DRH+KV GRGRR+RMP +CAARVFQLTRELG K+DG+TIEWLL+QAEP+I+AATGTGT P
Sbjct: 56 DRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTP 115
Query: 185 A 185
A
Sbjct: 116 A 116
>Os02g0641100
Length = 171
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/50 (76%), Positives = 44/50 (88%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEP 172
KDRHTKV+GRGRRIRMPALCAA +FQLTREL HK++ ET++WLLQQ P
Sbjct: 39 NKDRHTKVDGRGRRIRMPALCAAWIFQLTRELDHKSNSETVQWLLQQVAP 88
>Os01g0594401
Length = 165
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 41/44 (93%)
Query: 139 MPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
MPALCAAR+FQLTRELGHK+DGET++WLLQQAEPAIV A GTG
Sbjct: 1 MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVTAMGTGV 44
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.130 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,897,971
Number of extensions: 202419
Number of successful extensions: 390
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 13
Length of query: 419
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 316
Effective length of database: 11,657,759
Effective search space: 3683851844
Effective search space used: 3683851844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)