Os01g0924400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin-induced basic helix-loop-helix transcription factor.
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Os01g0924400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin-induced basic helix-loop-helix transcription factor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.26 | 0.305 | 13 | 0.291 | 0.848 | 0.433 | -0.46 | 0.888 | 0.516 | 7.62 | 29.6 | 1356 | -- | -- |
| 42.21 | 0.303 | 13 | 0.514 | 0.835 | 0.54 | -0.47 | -- | 0.611 | 7.64 | 29.2 | 1356 | -- | -- |
| 42.74 | 0.304 | 13 | 0.282 | 0.844 | 0.443 | -- | 0.839 | 0.533 | 7.62 | 29.4 | 1356 | -- | -- |
| 42.77 | 0.305 | 13 | 0.509 | 0.844 | 0.538 | -- | -- | 0.615 | 7.63 | 29.3 | 1356 | -- | -- |
| 58.15 | 0.355 | 13 | 0.553 | -- | 0.887 | -- | 0.202 | 0.816 | -- | 26.2 | 640 | -- | -- |
| 57.01 | 0.354 | 13 | 0.338 | 0.841 | -- | -0.456 | -- | 0.555 | 7.91 | -- | -- | -- | -- |
| 57.62 | 0.355 | 13 | 0.326 | 0.841 | -- | -- | -- | 0.556 | 7.93 | -- | -- | -- | -- |
| 58.04 | 0.355 | 13 | 0.599 | -- | 0.883 | -- | -- | 0.816 | -- | 26.1 | 634 | -- | -- |
| 49.22 | 0.327 | 13 | -- | 0.847 | 0.454 | -- | -- | 0.55 | 7.63 | 29.3 | 1355 | -- | -- |
| 96.13 | 0.458 | 13 | 0.335 | -- | -- | -- | -- | 0.567 | -- | -- | -- | -- | -- |
| 60.42 | 0.364 | 13 | -- | 0.843 | -- | -- | -- | 0.519 | 7.9 | -- | -- | -- | -- |
| 67.11 | 0.382 | 13 | -- | -- | 0.778 | -- | -- | 0.706 | -- | 26.01 | 585 | -- | -- |
| 99.09 | 0.465 | 13 | -- | -- | -- | -- | -- | 0.53 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.38 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 2 | 40.80 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 4 | 41.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 5 | 41.60 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 11 | 41.73 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 12 | 41.76 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 13 | 41.76 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 14 | 41.77 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 31 | 41.86 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 32 | 41.87 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 37 | 41.87 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 49 | 41.88 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 50 | 41.89 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 61 | 41.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 65 | 41.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 67 | 41.93 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 78 | 41.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 85 | 41.94 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 86 | 41.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 87 | 41.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 93 | 42.01 | temperature | 30 | 1440 | < th | dose independent | sin | 6 | NA |
| 98 | 42.08 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 115 | 42.11 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 137 | 42.14 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 162 | 42.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 168 | 42.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 169 | 42.17 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 172 | 42.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 173 | 42.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 187 | 42.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 237 | 42.34 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 340 | 42.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 342 | 42.46 | radiation | 30 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 374 | 42.54 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 520 | 42.79 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 527 | 42.81 | temperature | 25 | 1440 | > th | dose dependent | sin | 4 | NA |
| 542 | 42.83 | humidity | 50 | 14400 | < th | dose independent | sin | 11 | NA |
| 650 | 43.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 651 | 43.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 657 | 43.04 | radiation | 30 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 715 | 43.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 720 | 43.10 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 726 | 43.11 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 773 | 43.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 850 | 43.19 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 958 | 43.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 984 | 43.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 998 | 43.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 23 |