BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0924400 Os01g0924400|AK072037
(317 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G27010.1 | chr3:9957810-9958754 REVERSE LENGTH=315 137 5e-33
AT1G69690.1 | chr1:26216449-26217426 FORWARD LENGTH=326 132 3e-31
AT3G47620.1 | chr3:17559004-17560473 FORWARD LENGTH=490 130 1e-30
AT1G58100.1 | chr1:21512680-21513885 REVERSE LENGTH=402 128 4e-30
AT2G45680.1 | chr2:18820717-18821787 REVERSE LENGTH=357 126 2e-29
AT1G72010.1 | chr1:27107844-27108971 FORWARD LENGTH=376 124 7e-29
AT5G51910.1 | chr5:21094704-21095585 REVERSE LENGTH=294 120 6e-28
AT1G35560.1 | chr1:13116099-13117124 REVERSE LENGTH=342 119 2e-27
AT5G08330.1 | chr5:2680828-2681547 FORWARD LENGTH=240 115 2e-26
AT5G23280.1 | chr5:7843017-7843769 FORWARD LENGTH=251 115 3e-26
AT5G41030.1 | chr5:16428706-16429437 FORWARD LENGTH=244 106 2e-23
AT2G37000.1 | chr2:15540390-15540956 FORWARD LENGTH=189 105 3e-23
AT3G45150.1 | chr3:16531179-16531676 FORWARD LENGTH=166 87 9e-18
>AT3G27010.1 | chr3:9957810-9958754 REVERSE LENGTH=315
Length = 314
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 63/68 (92%), Positives = 68/68 (100%)
Query: 80 LGPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIV 139
LGPKRSSNKDRHTKV+GRGRRIRMPALCAARIFQLTRELGHKSDGET+QWLLQQAEP+I+
Sbjct: 71 LGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSII 130
Query: 140 AATGTGTI 147
AATG+GTI
Sbjct: 131 AATGSGTI 138
>AT1G69690.1 | chr1:26216449-26217426 FORWARD LENGTH=326
Length = 325
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 65/66 (98%)
Query: 82 PKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAA 141
PKR+S KDRHTKV+GRGRRIRMPA+CAAR+FQLTRELGHKSDGET++WLLQQAEPA++AA
Sbjct: 47 PKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAA 106
Query: 142 TGTGTI 147
TGTGTI
Sbjct: 107 TGTGTI 112
>AT3G47620.1 | chr3:17559004-17560473 FORWARD LENGTH=490
Length = 489
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 64/65 (98%)
Query: 83 KRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAAT 142
KR+S KDRHTKVDGRGRRIRMPALCAAR+FQLTRELGHKSDGET++WLLQQAEP+++AAT
Sbjct: 113 KRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAAT 172
Query: 143 GTGTI 147
GTGTI
Sbjct: 173 GTGTI 177
>AT1G58100.1 | chr1:21512680-21513885 REVERSE LENGTH=402
Length = 401
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/64 (90%), Positives = 62/64 (96%)
Query: 84 RSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATG 143
+ S KDRHTKVDGRGRRIRMPALCAAR+FQLTRELGHKSDGET++WLLQQAEPAIVAATG
Sbjct: 57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATG 116
Query: 144 TGTI 147
TGTI
Sbjct: 117 TGTI 120
>AT2G45680.1 | chr2:18820717-18821787 REVERSE LENGTH=357
Length = 356
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 62/65 (95%)
Query: 83 KRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAAT 142
KR+S KDRHTKV+GRGRRIRMPA CAARIFQLTRELGHKSDGET++WLL+ AEPAI+AAT
Sbjct: 71 KRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAAT 130
Query: 143 GTGTI 147
GTGT+
Sbjct: 131 GTGTV 135
>AT1G72010.1 | chr1:27107844-27108971 FORWARD LENGTH=376
Length = 375
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 54/64 (84%), Positives = 61/64 (95%)
Query: 84 RSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATG 143
+ KDRHTKVDGRGRRIRMPA+CAAR+FQLTRELGHKSDGET++WLLQQAEPAI+A+TG
Sbjct: 60 KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTG 119
Query: 144 TGTI 147
TGTI
Sbjct: 120 TGTI 123
>AT5G51910.1 | chr5:21094704-21095585 REVERSE LENGTH=294
Length = 293
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 63/67 (94%)
Query: 81 GPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVA 140
PKR ++KDRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGET++WLL++AEPAI+
Sbjct: 51 APKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIE 110
Query: 141 ATGTGTI 147
ATGTGT+
Sbjct: 111 ATGTGTV 117
>AT1G35560.1 | chr1:13116099-13117124 REVERSE LENGTH=342
Length = 341
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 61/65 (93%), Gaps = 1/65 (1%)
Query: 83 KRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAAT 142
KR S KDRH KVDGRGRRIRMPA+CAAR+FQLTREL HKSDGET++WLLQQAEPAI+AAT
Sbjct: 52 KRPS-KDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAAT 110
Query: 143 GTGTI 147
GTGTI
Sbjct: 111 GTGTI 115
>AT5G08330.1 | chr5:2680828-2681547 FORWARD LENGTH=240
Length = 239
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 61/64 (95%)
Query: 83 KRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAAT 142
K+ +KDRH+KVDGRGRRIRMP +CAAR+FQLTRELGHKSDG+T++WLL+QAEP+I+AAT
Sbjct: 27 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT 86
Query: 143 GTGT 146
GTGT
Sbjct: 87 GTGT 90
>AT5G23280.1 | chr5:7843017-7843769 FORWARD LENGTH=251
Length = 250
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 60/64 (93%)
Query: 83 KRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAAT 142
K+ KDRH+KVDGRGRRIRMP +CAAR+FQLTRELGHKSDG+T++WLL+QAEP+I+AAT
Sbjct: 35 KKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT 94
Query: 143 GTGT 146
GTGT
Sbjct: 95 GTGT 98
>AT5G41030.1 | chr5:16428706-16429437 FORWARD LENGTH=244
Length = 243
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 56/63 (88%)
Query: 83 KRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAAT 142
K+ NKDRH KV+GRGRR+R+P LCAARI+QLT+ELGHKSDGET++WLLQ AEP+I++AT
Sbjct: 64 KKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAEPSILSAT 123
Query: 143 GTG 145
G
Sbjct: 124 VNG 126
>AT2G37000.1 | chr2:15540390-15540956 FORWARD LENGTH=189
Length = 188
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/60 (76%), Positives = 54/60 (90%)
Query: 87 NKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGT 146
KDRHTKV+GR RR+ MPAL AARIFQLTRELGHK++GET++WLL QAEP+I+AATG GT
Sbjct: 43 TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATGYGT 102
>AT3G45150.1 | chr3:16531179-16531676 FORWARD LENGTH=166
Length = 165
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 48/62 (77%)
Query: 84 RSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATG 143
R + KDRH K+ GR RRIR+P A ++F+LT+ELG K+DGETV WLLQ AEPAI AATG
Sbjct: 14 RRTPKDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAEPAIFAATG 73
Query: 144 TG 145
G
Sbjct: 74 HG 75
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,244,455
Number of extensions: 76344
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 13
Length of query: 317
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,392,385
Effective search space: 1829539930
Effective search space used: 1829539930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)