BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0924400 Os01g0924400|AK072037
(317 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0924400 Similar to Auxin-induced basic helix-loop-heli... 274 6e-74
Os02g0747400 Similar to PCF1 132 3e-31
Os06g0226700 Similar to PCF1 130 1e-30
Os12g0173333 TCP transcription factor family protein 125 3e-29
Os11g0175700 Similar to Transcription factor PCF3 (Fragment) 122 3e-28
Os08g0544800 PCF2 120 1e-27
Os02g0641100 118 7e-27
Os02g0828566 TCP transcription factor family protein 116 3e-26
Os09g0521300 114 1e-25
Os04g0194600 Similar to PCF1 107 8e-24
Os04g0526000 Similar to Auxin-induced basic helix-loop-heli... 105 3e-23
Os02g0635800 TCP transcription factor family protein 103 1e-22
Os01g0594401 87 1e-17
>Os01g0924400 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 317
Score = 274 bits (701), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 161/317 (50%), Positives = 161/317 (50%)
Query: 1 MDPKFXXXXXLNKTEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MDPKF LNKTEP
Sbjct: 1 MDPKFPPPPPLNKTEPTTTTTNQQHHHDEQQQQHRLQIQVHPQQQEQQDGGGGGGKDQQQ 60
Query: 61 XXXXXXXXXXXXXERRMQGLGPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGH 120
ERRMQGLGPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGH
Sbjct: 61 QQQMQVVVAAAAGERRMQGLGPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGH 120
Query: 121 KSDGETVQWLLQQAEPAIVAATGTGTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXMWXXX 180
KSDGETVQWLLQQAEPAIVAATGTGTI MW
Sbjct: 121 KSDGETVQWLLQQAEPAIVAATGTGTIPASALASVAPSLPSPNSALSRSHHHHHHMWAAA 180
Query: 181 XXXXXXXXXXXXXXXXDSGVIGGIMQRMGIPAGIELQXXXXXXXXXXXXXXXXHIGXXXX 240
DSGVIGGIMQRMGIPAGIELQ HIG
Sbjct: 181 PPTASAGFAGAGFSGADSGVIGGIMQRMGIPAGIELQGGGAGGLGGGGGGGGGHIGFAPM 240
Query: 241 XXXXXXXXXXXXGLELGLSQDGHIGVLAAQSLSQFYHQVGAAGQLXXXXXXXXXXXXXXX 300
GLELGLSQDGHIGVLAAQSLSQFYHQVGAAGQL
Sbjct: 241 FASHAAAAAAMPGLELGLSQDGHIGVLAAQSLSQFYHQVGAAGQLQHQHQHHHQQQQQQQ 300
Query: 301 DGEDNRDDGESDEESGQ 317
DGEDNRDDGESDEESGQ
Sbjct: 301 DGEDNRDDGESDEESGQ 317
>Os02g0747400 Similar to PCF1
Length = 410
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 69/74 (93%)
Query: 74 ERRMQGLGPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQ 133
E +++ PKRSS KDRHTKV+GRGRRIRMPALCAAR+FQLTRELGHK+DGET++WLLQQ
Sbjct: 60 EMQLRKAAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQ 119
Query: 134 AEPAIVAATGTGTI 147
AEPA++AATGTGTI
Sbjct: 120 AEPAVIAATGTGTI 133
>Os06g0226700 Similar to PCF1
Length = 387
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 65/66 (98%)
Query: 82 PKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAA 141
PKR+S KDRHTKVDGRGRRIRMPA+CAAR+FQLTRELGHK+DGET++WLLQQAEPA++AA
Sbjct: 54 PKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAA 113
Query: 142 TGTGTI 147
TGTGTI
Sbjct: 114 TGTGTI 119
>Os12g0173333 TCP transcription factor family protein
Length = 418
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 63/65 (96%), Gaps = 1/65 (1%)
Query: 83 KRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAAT 142
KR S KDRHTKVDGRGRRIRMPALCAAR+FQLTRELGHKSDGET++WLLQQAEPAI+AAT
Sbjct: 106 KRPS-KDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAAT 164
Query: 143 GTGTI 147
GTGTI
Sbjct: 165 GTGTI 169
>Os11g0175700 Similar to Transcription factor PCF3 (Fragment)
Length = 419
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/61 (90%), Positives = 60/61 (98%)
Query: 87 NKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGT 146
KDRHTKV+GRGRRIRMPALCAAR+FQLTRELGHK+DGET++WLLQQAEPAIVAATGTGT
Sbjct: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
Query: 147 I 147
I
Sbjct: 183 I 183
>Os08g0544800 PCF2
Length = 373
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/61 (86%), Positives = 60/61 (98%)
Query: 87 NKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGT 146
N+DRHTKV+GRGRRIRMPA CAARIFQLTRELGHKSDGET++WLLQQ+EPAI+AATGTGT
Sbjct: 75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGT 134
Query: 147 I 147
+
Sbjct: 135 V 135
>Os02g0641100
Length = 171
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/63 (88%), Positives = 57/63 (90%)
Query: 74 ERRMQGLGPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQ 133
RRMQGLGPKRSSNKDRHTKVDGRGRRIRMPALCAA IFQLTREL HKS+ ETVQWLLQQ
Sbjct: 26 NRRMQGLGPKRSSNKDRHTKVDGRGRRIRMPALCAAWIFQLTRELDHKSNSETVQWLLQQ 85
Query: 134 AEP 136
P
Sbjct: 86 VAP 88
>Os02g0828566 TCP transcription factor family protein
Length = 236
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 62/68 (91%)
Query: 79 GLGPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAI 138
L ++ +KDRH+KVDGRGRRIRMP +CAAR+FQLTRELGHKSDG+T++WLL+QAEP+I
Sbjct: 29 ALAVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSI 88
Query: 139 VAATGTGT 146
+AATGTGT
Sbjct: 89 IAATGTGT 96
>Os09g0521300
Length = 381
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 57/61 (93%)
Query: 87 NKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGT 146
N+DRH KV+GRGRRIRMP CAARI QLTRELGHKSDGET++WL+QQ+EPAIVAATGTGT
Sbjct: 125 NRDRHVKVEGRGRRIRMPVNCAARIAQLTRELGHKSDGETIRWLMQQSEPAIVAATGTGT 184
Query: 147 I 147
+
Sbjct: 185 V 185
>Os04g0194600 Similar to PCF1
Length = 176
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 58/64 (90%)
Query: 83 KRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAAT 142
K S+ DRH+KV GRGRR+R+PA+ AAR+FQLTRELGH++DGET++WLL+QAEP+I+AAT
Sbjct: 45 KSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAAT 104
Query: 143 GTGT 146
GTG
Sbjct: 105 GTGV 108
>Os04g0526000 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 206
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 57/59 (96%)
Query: 88 KDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGT 146
KDRH+KV+GRGRR+RMP +CAAR+FQLTRELG KSDG+T++WLL+QAEP+I+AATG+GT
Sbjct: 56 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGT 114
>Os02g0635800 TCP transcription factor family protein
Length = 211
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 56/58 (96%)
Query: 89 DRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGT 146
DRH+KV+GRGRR+RMP +CAAR+FQLTRELG KSDG+T++WLL+QAEP+I+AATGTGT
Sbjct: 56 DRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGT 113
>Os01g0594401
Length = 165
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/44 (93%), Positives = 41/44 (93%)
Query: 103 MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGT 146
MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIV A GTG
Sbjct: 1 MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVTAMGTGV 44
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,461,178
Number of extensions: 143228
Number of successful extensions: 531
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 15
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)