Os08g0544800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PCF2.
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Os08g0544800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PCF2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.69 | 0.328 | 10.6 | 1.32 | 1.06 | 1.04 | 0.0713 | -1.21 | 0.205 | 2.69 | 29.6 | 211 | -- | -- |
| 50.22 | 0.33 | 10.6 | 1.11 | 1.07 | 0.996 | -0.302 | -- | 0.141 | 2.69 | 28.97 | 197 | -- | -- |
| 48.71 | 0.325 | 10.6 | 1.31 | 1.06 | 1.04 | -- | -1.16 | 0.201 | 2.69 | 29.6 | 210 | -- | -- |
| 50.27 | 0.33 | 10.6 | 1.09 | 1.05 | 1.05 | -- | -- | 0.143 | 2.66 | 29.4 | 198 | -- | -- |
| 91.67 | 0.446 | 10.6 | 1.5 | -- | 2.05 | -- | -0.747 | 0.381 | -- | 30.1 | 120 | -- | -- |
| 65.3 | 0.379 | 10.7 | 0.833 | 1.37 | -- | -0.182 | -- | -0.066 | 2.99 | -- | -- | -- | -- |
| 65.41 | 0.379 | 10.7 | 0.837 | 1.36 | -- | -- | -- | -0.0649 | 2.98 | -- | -- | -- | -- |
| 92.48 | 0.448 | 10.6 | 1.43 | -- | 2.08 | -- | -- | 0.383 | -- | 29.9 | 120 | -- | -- |
| 79.91 | 0.419 | 10.7 | -- | 1.21 | 0.513 | -- | -- | -0.0713 | 3.1 | 29.81 | 243 | -- | -- |
| 172.37 | 0.613 | 10.7 | 0.896 | -- | -- | -- | -- | -0.0295 | -- | -- | -- | -- | -- |
| 83.89 | 0.428 | 10.7 | -- | 1.38 | -- | -- | -- | -0.158 | 2.98 | -- | -- | -- | -- |
| 139.21 | 0.551 | 10.6 | -- | -- | 1.88 | -- | -- | 0.0847 | -- | 62.09 | 54 | -- | -- |
| 193.52 | 0.649 | 10.7 | -- | -- | -- | -- | -- | -0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 2 | 44.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 4 | 44.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 5 | 44.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 20 | 45.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 27 | 45.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 57 | 46.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 76 | 47.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 85 | 47.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 111 | 47.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 123 | 47.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 22 |
| 127 | 48.06 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 153 | 48.32 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 189 | 48.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 229 | 49.14 | temperature | 15 | 270 | > th | dose dependent | sin | 5 | NA |
| 231 | 49.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 235 | 49.18 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 253 | 49.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 326 | 49.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 353 | 49.82 | temperature | 15 | 90 | > th | dose dependent | sin | 1 | NA |
| 361 | 49.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 371 | 49.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 475 | 50.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 519 | 50.37 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 17 |
| 521 | 50.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 555 | 50.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 569 | 50.48 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 572 | 50.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 582 | 50.50 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 613 | 50.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 650 | 50.61 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 679 | 50.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 7 |
| 875 | 50.87 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 885 | 50.88 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 919 | 50.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 925 | 50.92 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 18 |
| 946 | 50.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |