BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0544800 Os08g0544800|AK119660
(373 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45680.1 | chr2:18820717-18821787 REVERSE LENGTH=357 156 2e-38
AT5G51910.1 | chr5:21094704-21095585 REVERSE LENGTH=294 144 6e-35
AT1G69690.1 | chr1:26216449-26217426 FORWARD LENGTH=326 132 3e-31
AT1G72010.1 | chr1:27107844-27108971 FORWARD LENGTH=376 130 2e-30
AT3G47620.1 | chr3:17559004-17560473 FORWARD LENGTH=490 126 1e-29
AT1G58100.1 | chr1:21512680-21513885 REVERSE LENGTH=402 126 1e-29
AT3G27010.1 | chr3:9957810-9958754 REVERSE LENGTH=315 124 1e-28
AT1G35560.1 | chr1:13116099-13117124 REVERSE LENGTH=342 121 5e-28
AT5G23280.1 | chr5:7843017-7843769 FORWARD LENGTH=251 119 3e-27
AT5G08330.1 | chr5:2680828-2681547 FORWARD LENGTH=240 119 3e-27
AT5G41030.1 | chr5:16428706-16429437 FORWARD LENGTH=244 103 2e-22
AT2G37000.1 | chr2:15540390-15540956 FORWARD LENGTH=189 102 4e-22
AT3G45150.1 | chr3:16531179-16531676 FORWARD LENGTH=166 85 7e-17
>AT2G45680.1 | chr2:18820717-18821787 REVERSE LENGTH=357
Length = 356
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 124/237 (52%), Gaps = 65/237 (27%)
Query: 52 LVPKPEPVEFFGGMAMV---RKPPPRNR----DRHTKVEGRGRRIRMPAACAARIFQLTR 104
L PK EPV M++ PP R DRHTKVEGRGRRIRMPA CAARIFQLTR
Sbjct: 45 LEPKAEPVMPSFSMSLAPPSSTGPPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTR 104
Query: 105 ELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATTVDGVLRIPTQXXXXXXXXXXXVV 164
ELGHKSDGETIRWLL+ +EPAIIAATGTGTVPAIA +V+G L+IPT
Sbjct: 105 ELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTNADS-------- 156
Query: 165 DGEESSAKRRRKLQPTRXXXXXXXXXXXXXXXXXXXXXXXLLQGSGGAAISVPSGLAPIT 224
D E+ K++RK +P+ A+S SGLAPI
Sbjct: 157 DMGENLMKKKRK-RPSNSEYIDI-----------------------SDAVSASSGLAPIA 192
Query: 225 ATGA-----------------PQGLVPVFAVPATGSPAVAGGNRMIPQATAVWMVPQ 264
T PQG+ P++A+P+ N MIP A +++PQ
Sbjct: 193 TTTTIQPPQALASSTVAQQLLPQGMYPMWAIPS---------NAMIPTVGAFFLIPQ 240
>AT5G51910.1 | chr5:21094704-21095585 REVERSE LENGTH=294
Length = 293
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 110/199 (55%), Gaps = 38/199 (19%)
Query: 73 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGT 132
P ++DRHTKVEGRGRRIRMPA CAAR+FQLTRELGHKSDGETIRWLL+++EPAII ATGT
Sbjct: 55 PTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGT 114
Query: 133 GTVPAIATTVDGVLRIPTQXXXXXXXXXXXVVDGEESSAKRRRKLQPTRXXXXXXXXXXX 192
GTVPAIA +V+G L+IPT + K+RRK T
Sbjct: 115 GTVPAIAVSVNGTLKIPTSSPVLNDGGRDG----DGDLIKKRRKRNCT------------ 158
Query: 193 XXXXXXXXXXXXLLQGSGGAAISVPSGLAPITATGA--------PQGLVPVFAVPATGSP 244
+ + SV SGLAPITA+ QG VP + + G+
Sbjct: 159 ----------SDFVDVNDSCHSSVTSGLAPITASNYGVNILNVNTQGFVPFWPM-GMGTA 207
Query: 245 AVAGGNRMIPQATAVWMVP 263
V GG + Q +W +P
Sbjct: 208 FVTGGPDQMGQ---MWAIP 223
>AT1G69690.1 | chr1:26216449-26217426 FORWARD LENGTH=326
Length = 325
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 70/78 (89%), Gaps = 3/78 (3%)
Query: 69 RKPPPR---NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPA 125
+KPPP+ +DRHTKVEGRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+EPA
Sbjct: 43 KKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPA 102
Query: 126 IIAATGTGTVPAIATTVD 143
+IAATGTGT+PA T+++
Sbjct: 103 VIAATGTGTIPANFTSLN 120
>AT1G72010.1 | chr1:27107844-27108971 FORWARD LENGTH=376
Length = 375
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 70/80 (87%), Gaps = 3/80 (3%)
Query: 68 VRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAII 127
V+KP +DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+EPAII
Sbjct: 59 VKKP---TKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 115
Query: 128 AATGTGTVPAIATTVDGVLR 147
A+TGTGT+PA +T++ LR
Sbjct: 116 ASTGTGTIPANFSTLNASLR 135
>AT3G47620.1 | chr3:17559004-17560473 FORWARD LENGTH=490
Length = 489
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 69/78 (88%), Gaps = 3/78 (3%)
Query: 69 RKPPPR---NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPA 125
+KPP + +DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+EP+
Sbjct: 108 KKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPS 167
Query: 126 IIAATGTGTVPAIATTVD 143
+IAATGTGT+PA T+++
Sbjct: 168 VIAATGTGTIPANFTSLN 185
>AT1G58100.1 | chr1:21512680-21513885 REVERSE LENGTH=402
Length = 401
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 65/72 (90%)
Query: 76 RDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTV 135
+DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+EPAI+AATGTGT+
Sbjct: 61 KDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTI 120
Query: 136 PAIATTVDGVLR 147
PA +T+ LR
Sbjct: 121 PANFSTLSVSLR 132
>AT3G27010.1 | chr3:9957810-9958754 REVERSE LENGTH=315
Length = 314
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/62 (88%), Positives = 61/62 (98%)
Query: 75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGT 134
N+DRHTKVEGRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLLQQ+EP+IIAATG+GT
Sbjct: 78 NKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGT 137
Query: 135 VP 136
+P
Sbjct: 138 IP 139
>AT1G35560.1 | chr1:13116099-13117124 REVERSE LENGTH=342
Length = 341
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 65/73 (89%)
Query: 75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGT 134
++DRH KV+GRGRRIRMPA CAAR+FQLTREL HKSDGETI WLLQQ+EPAIIAATGTGT
Sbjct: 55 SKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGT 114
Query: 135 VPAIATTVDGVLR 147
+PA +T++ LR
Sbjct: 115 IPANISTLNISLR 127
>AT5G23280.1 | chr5:7843017-7843769 FORWARD LENGTH=251
Length = 250
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 68/81 (83%), Gaps = 2/81 (2%)
Query: 67 MVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAI 126
+V+KPP + DRH+KV+GRGRRIRMP CAAR+FQLTRELGHKSDG+TI WLL+Q+EP+I
Sbjct: 33 VVKKPPAK--DRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSI 90
Query: 127 IAATGTGTVPAIATTVDGVLR 147
IAATGTGT PA +T +R
Sbjct: 91 IAATGTGTTPASFSTASVSIR 111
>AT5G08330.1 | chr5:2680828-2681547 FORWARD LENGTH=240
Length = 239
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 68/79 (86%), Gaps = 2/79 (2%)
Query: 63 GGMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQS 122
G + V+KPP ++DRH+KV+GRGRRIRMP CAAR+FQLTRELGHKSDG+TI WLL+Q+
Sbjct: 21 GPLNAVKKPP--SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQA 78
Query: 123 EPAIIAATGTGTVPAIATT 141
EP+IIAATGTGT PA +T
Sbjct: 79 EPSIIAATGTGTTPASFST 97
>AT5G41030.1 | chr5:16428706-16429437 FORWARD LENGTH=244
Length = 243
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 53/63 (84%)
Query: 75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGT 134
N+DRH KVEGRGRR+R+P CAARI+QLT+ELGHKSDGET+ WLLQ +EP+I++AT G
Sbjct: 68 NKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAEPSILSATVNGI 127
Query: 135 VPA 137
P
Sbjct: 128 KPT 130
>AT2G37000.1 | chr2:15540390-15540956 FORWARD LENGTH=189
Length = 188
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 52/61 (85%)
Query: 74 RNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTG 133
R +DRHTKV GR RR+ MPA AARIFQLTRELGHK++GETI WLL Q+EP+IIAATG G
Sbjct: 42 RTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATGYG 101
Query: 134 T 134
T
Sbjct: 102 T 102
>AT3G45150.1 | chr3:16531179-16531676 FORWARD LENGTH=166
Length = 165
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 47/58 (81%)
Query: 76 RDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTG 133
+DRH K+ GR RRIR+P + A ++F+LT+ELG K+DGET+ WLLQ +EPAI AATG G
Sbjct: 18 KDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAEPAIFAATGHG 75
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,367,555
Number of extensions: 235066
Number of successful extensions: 480
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 13
Length of query: 373
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,364,969
Effective search space: 2283636537
Effective search space used: 2283636537
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)