BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0544800 Os08g0544800|AK119660
(373 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0544800 PCF2 544 e-155
Os09g0521300 221 7e-58
Os01g0924400 Similar to Auxin-induced basic helix-loop-heli... 125 5e-29
Os02g0747400 Similar to PCF1 125 6e-29
Os12g0173333 TCP transcription factor family protein 124 1e-28
Os06g0226700 Similar to PCF1 123 2e-28
Os11g0175700 Similar to Transcription factor PCF3 (Fragment) 123 2e-28
Os02g0828566 TCP transcription factor family protein 119 3e-27
Os04g0526000 Similar to Auxin-induced basic helix-loop-heli... 108 9e-24
Os02g0635800 TCP transcription factor family protein 106 3e-23
Os04g0194600 Similar to PCF1 105 5e-23
Os02g0641100 87 2e-17
Os01g0594401 82 5e-16
>Os08g0544800 PCF2
Length = 373
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 282/349 (80%), Positives = 282/349 (80%)
Query: 1 MEAQAQDKAEEGEEEGTRQQHAQXXXXXXXXXXXXXXXXXXXMSAIPMNSWLVPKPEPVE 60
MEAQAQDKAEEGEEEGTRQQHAQ MSAIPMNSWLVPKPEPVE
Sbjct: 1 MEAQAQDKAEEGEEEGTRQQHAQAGPVGAAGGGGGGGAAAVAMSAIPMNSWLVPKPEPVE 60
Query: 61 FFGGMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQ 120
FFGGMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQ
Sbjct: 61 FFGGMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQ 120
Query: 121 QSEPAIIAATGTGTVPAIATTVDGVLRIPTQXXXXXXXXXXXVVDGEESSAKRRRKLQPT 180
QSEPAIIAATGTGTVPAIATTVDGVLRIPTQ VVDGEESSAKRRRKLQPT
Sbjct: 121 QSEPAIIAATGTGTVPAIATTVDGVLRIPTQSSSSSGPASSAVVDGEESSAKRRRKLQPT 180
Query: 181 RXXXXXXXXXXXXXXXXXXXXXXXLLQGSGGAAISVPSGLAPITATGAPQGLVPVFAVPA 240
R LLQGSGGAAISVPSGLAPITATGAPQGLVPVFAVPA
Sbjct: 181 RAVAGASPLATAAPAAYYPVIADPLLQGSGGAAISVPSGLAPITATGAPQGLVPVFAVPA 240
Query: 241 TGSPAVAGGNRMIPQATAVWMVPQPXXXXXXXNQPTQFWAIQSAPQLVNFAGAQFPTAIN 300
TGSPAVAGGNRMIPQATAVWMVPQP NQPTQFWAIQSAPQLVNFAGAQFPTAIN
Sbjct: 241 TGSPAVAGGNRMIPQATAVWMVPQPAGAAGAGNQPTQFWAIQSAPQLVNFAGAQFPTAIN 300
Query: 301 VADFXXXXXXXPVSTTIVQNSNSGEHMHFSGADSHEQQRRGRKEGNSGG 349
VADF PVSTTIVQNSNSGEHMHFSGADSHEQQRRGRKEGNSGG
Sbjct: 301 VADFQQQQQQQPVSTTIVQNSNSGEHMHFSGADSHEQQRRGRKEGNSGG 349
>Os09g0521300
Length = 381
Score = 221 bits (563), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 146/261 (55%), Positives = 160/261 (61%), Gaps = 28/261 (10%)
Query: 44 SAIPMNSWLVPKPEPV--EFFGGMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQ 101
SA LVPKPEPV EF G+A V KPPPRNRDRH KVEGRGRRIRMP CAARI Q
Sbjct: 93 SAFAAGMALVPKPEPVAVEFLRGLA-VAKPPPRNRDRHVKVEGRGRRIRMPVNCAARIAQ 151
Query: 102 LTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATTVDGVLRIPTQXXXXXXXXXX 161
LTRELGHKSDGETIRWL+QQSEPAI+AATGTGTVPAIATTVDGVLRIPT+
Sbjct: 152 LTRELGHKSDGETIRWLMQQSEPAIVAATGTGTVPAIATTVDGVLRIPTE-------SPS 204
Query: 162 XVVDGEESSAKRRRKLQPTRXXX---XXXXXXXXXXXXXXXXXXXXLLQGSGGAAISVPS 218
G+E + KRRRKLQPTR LLQ +GG +IS+ S
Sbjct: 205 AAARGDEPAPKRRRKLQPTRAAAGGPVEALAAAPPPAVYYPIVADPLLQANGGGSISISS 264
Query: 219 GLAPI------TATGAPQGLVPVFAVPATGSPAVAGGNRMIPQATAVWMVPQPXXXXXXX 272
GLAP TATG G +P A+PAT GG + + AT VWMV P
Sbjct: 265 GLAPASSATPPTATGG--GAIPFIAMPATSD----GGKQAMSPAT-VWMV--PPGGAGAV 315
Query: 273 NQPTQFWAIQSAPQLVNFAGA 293
NQP Q+WA Q P NFAGA
Sbjct: 316 NQPIQYWAFQPNPDHANFAGA 336
>Os01g0924400 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 317
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 63/65 (96%)
Query: 75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGT 134
N+DRHTKV+GRGRRIRMPA CAARIFQLTRELGHKSDGET++WLLQQ+EPAI+AATGTGT
Sbjct: 87 NKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGT 146
Query: 135 VPAIA 139
+PA A
Sbjct: 147 IPASA 151
>Os02g0747400 Similar to PCF1
Length = 410
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 69/79 (87%), Gaps = 3/79 (3%)
Query: 68 VRKPPPR---NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEP 124
+RK P+ +DRHTKVEGRGRRIRMPA CAAR+FQLTRELGHK+DGETI WLLQQ+EP
Sbjct: 63 LRKAAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEP 122
Query: 125 AIIAATGTGTVPAIATTVD 143
A+IAATGTGT+PA T+++
Sbjct: 123 AVIAATGTGTIPANFTSLN 141
>Os12g0173333 TCP transcription factor family protein
Length = 418
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 67/73 (91%)
Query: 75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGT 134
++DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+EPAIIAATGTGT
Sbjct: 109 SKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGT 168
Query: 135 VPAIATTVDGVLR 147
+PA ++++ +R
Sbjct: 169 IPANFSSLNISIR 181
>Os06g0226700 Similar to PCF1
Length = 387
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 67/75 (89%), Gaps = 2/75 (2%)
Query: 71 PPPRN--RDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIA 128
PP R +DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHK+DGETI WLLQQ+EPA+IA
Sbjct: 53 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIA 112
Query: 129 ATGTGTVPAIATTVD 143
ATGTGT+PA T+++
Sbjct: 113 ATGTGTIPANFTSLN 127
>Os11g0175700 Similar to Transcription factor PCF3 (Fragment)
Length = 419
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 65/73 (89%)
Query: 75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGT 134
+DRHTKVEGRGRRIRMPA CAAR+FQLTRELGHK+DGETI WLLQQ+EPAI+AATGTGT
Sbjct: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
Query: 135 VPAIATTVDGVLR 147
+PA +++ LR
Sbjct: 183 IPANFSSLAVSLR 195
>Os02g0828566 TCP transcription factor family protein
Length = 236
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 65/75 (86%), Gaps = 2/75 (2%)
Query: 63 GGMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQS 122
G VRKPP ++DRH+KV+GRGRRIRMP CAAR+FQLTRELGHKSDG+TI WLL+Q+
Sbjct: 27 GTALAVRKPP--SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQA 84
Query: 123 EPAIIAATGTGTVPA 137
EP+IIAATGTGT PA
Sbjct: 85 EPSIIAATGTGTTPA 99
>Os04g0526000 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 206
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 57/63 (90%)
Query: 76 RDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTV 135
+DRH+KV GRGRR+RMP CAAR+FQLTRELG KSDG+TI WLL+Q+EP+I+AATG+GT
Sbjct: 56 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTT 115
Query: 136 PAI 138
PA+
Sbjct: 116 PAV 118
>Os02g0635800 TCP transcription factor family protein
Length = 211
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 55/61 (90%)
Query: 77 DRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVP 136
DRH+KV GRGRR+RMP CAAR+FQLTRELG KSDG+TI WLL+Q+EP+I+AATGTGT P
Sbjct: 56 DRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTP 115
Query: 137 A 137
A
Sbjct: 116 A 116
>Os04g0194600 Similar to PCF1
Length = 176
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 56/64 (87%)
Query: 73 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGT 132
P + DRH+KV GRGRR+R+PA AAR+FQLTRELGH++DGETI WLL+Q+EP+IIAATGT
Sbjct: 47 PSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGT 106
Query: 133 GTVP 136
G P
Sbjct: 107 GVTP 110
>Os02g0641100
Length = 171
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 44/50 (88%)
Query: 75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEP 124
N+DRHTKV+GRGRRIRMPA CAA IFQLTREL HKS+ ET++WLLQQ P
Sbjct: 39 NKDRHTKVDGRGRRIRMPALCAAWIFQLTRELDHKSNSETVQWLLQQVAP 88
>Os01g0594401
Length = 165
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 91 MPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATTV 142
MPA CAARIFQLTRELGHKSDGET++WLLQQ+EPAI+ A GTG I T+
Sbjct: 1 MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVTAMGTGVGADIRRTL 52
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,660,266
Number of extensions: 496019
Number of successful extensions: 1481
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1471
Number of HSP's successfully gapped: 13
Length of query: 373
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 271
Effective length of database: 11,709,973
Effective search space: 3173402683
Effective search space used: 3173402683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)