Os06g0226700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PCF1.
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Os06g0226700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PCF1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.42 | 0.524 | 8.74 | -1.45 | 3.07 | -1.97 | -0.14 | -0.754 | 0.469 | 22.1 | 19.7 | 3670 | -- | -- |
| 122.96 | 0.516 | 8.79 | -1.39 | 3.07 | -1.44 | -0.0413 | -- | 0.356 | 22.1 | 21.7 | 3396 | -- | -- |
| 124.5 | 0.52 | 8.74 | -1.44 | 3.07 | -1.96 | -- | -0.734 | 0.469 | 22.1 | 19.7 | 3669 | -- | -- |
| 120.29 | 0.511 | 8.76 | -1.17 | 3.03 | -1.36 | -- | -- | 0.462 | 22.1 | 21.8 | 2187 | -- | -- |
| 599.76 | 1.14 | 8.7 | -1.02 | -- | -2.01 | -- | -0.605 | 0.415 | -- | 21.8 | 796 | -- | -- |
| 177.44 | 0.624 | 8.67 | -0.538 | 3.13 | -- | -0.0934 | -- | 0.881 | 22.1 | -- | -- | -- | -- |
| 177.47 | 0.624 | 8.67 | -0.535 | 3.14 | -- | -- | -- | 0.881 | 22.1 | -- | -- | -- | -- |
| 600.68 | 1.14 | 8.69 | -1.02 | -- | -1.95 | -- | -- | 0.368 | -- | 21.8 | 800 | -- | -- |
| 146.59 | 0.564 | 8.72 | -- | 3.07 | -0.963 | -- | -- | 0.628 | 22.1 | 22.36 | 2108 | -- | -- |
| 772.1 | 1.3 | 8.59 | -0.492 | -- | -- | -- | -- | 0.886 | -- | -- | -- | -- | -- |
| 185.01 | 0.636 | 8.66 | -- | 3.13 | -- | -- | -- | 0.941 | 22.1 | -- | -- | -- | -- |
| 538.45 | 1.08 | 8.76 | -- | -- | -2.25 | -- | -- | 0.233 | -- | 25.2 | 771 | -- | -- |
| 778.49 | 1.3 | 8.57 | -- | -- | -- | -- | -- | 0.941 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 11 | 123.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 20 | 124.29 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 50 | 125.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 62 | 125.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 14 |
| 63 | 125.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 71 | 125.45 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 102 | 125.84 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 151 | 126.22 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 152 | 126.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 11 |
| 166 | 126.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 229 | 126.59 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 281 | 126.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 297 | 126.86 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 405 | 127.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 439 | 127.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 490 | 127.37 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 514 | 127.42 | temperature | 25 | 4320 | < th | dose dependent | rect. | 10 | 19 |
| 523 | 127.43 | temperature | 25 | 4320 | < th | dose dependent | rect. | 14 | 15 |
| 527 | 127.44 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 13 |
| 629 | 127.58 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 647 | 127.61 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 671 | 127.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 726 | 127.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 727 | 127.72 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 731 | 127.73 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 733 | 127.73 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 738 | 127.74 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 767 | 127.80 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 788 | 127.82 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 803 | 127.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 938 | 128.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 993 | 128.24 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 1 |