BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0226700 Os06g0226700|AK064240
(387 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0226700 Similar to PCF1 323 9e-89
Os02g0747400 Similar to PCF1 224 1e-58
Os12g0173333 TCP transcription factor family protein 135 5e-32
Os01g0924400 Similar to Auxin-induced basic helix-loop-heli... 135 5e-32
Os11g0175700 Similar to Transcription factor PCF3 (Fragment) 135 7e-32
Os08g0544800 PCF2 122 7e-28
Os02g0828566 TCP transcription factor family protein 120 1e-27
Os09g0521300 114 1e-25
Os04g0526000 Similar to Auxin-induced basic helix-loop-heli... 113 2e-25
Os04g0194600 Similar to PCF1 112 4e-25
Os02g0635800 TCP transcription factor family protein 111 7e-25
Os02g0641100 96 5e-20
Os01g0594401 82 6e-16
>Os06g0226700 Similar to PCF1
Length = 387
Score = 323 bits (829), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 182/308 (59%), Positives = 182/308 (59%)
Query: 1 MDVTXXXXXXXQRPNFPLQLLGKKEEQTCSTSQTXXXXXXXXXXXXXXXXXXPPKRTSTK 60
MDVT QRPNFPLQLLGKKEEQTCSTSQT PPKRTSTK
Sbjct: 1 MDVTGDGGGGGQRPNFPLQLLGKKEEQTCSTSQTAGAGGGGVVGANGSAAAAPPKRTSTK 60
Query: 61 DRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIP 120
DRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIP
Sbjct: 61 DRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIP 120
Query: 121 ANFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAWDRVVGLGFGGAADAPXX 180
ANFT DAWDRVVGLGFGGAADAP
Sbjct: 121 ANFTSLNISLRSSGSSLSIPSHLRLAGLAGPRFGGGARAADAWDRVVGLGFGGAADAPSS 180
Query: 181 XXXXXXXXXXXXXXXXXVGLDVXXXXXXXXXXXXDLSRKRRWXXXXXXXXXXXXXXAGYT 240
VGLDV DLSRKRRW AGYT
Sbjct: 181 ATSSSSSPLLLSFHSGSVGLDVSPPSASTSPAAADLSRKRRWEQEMQQQQQYQQQMAGYT 240
Query: 241 QSQIPAGTVWMVPSSNAQXXXXXXXXXXXXESIWTFPQXXXXXXXXAATVYRGVPSGLHF 300
QSQIPAGTVWMVPSSNAQ ESIWTFPQ AATVYRGVPSGLHF
Sbjct: 241 QSQIPAGTVWMVPSSNAQAAGGGAPPGGGGESIWTFPQSGSGGGGGAATVYRGVPSGLHF 300
Query: 301 MNFPATPM 308
MNFPATPM
Sbjct: 301 MNFPATPM 308
>Os02g0747400 Similar to PCF1
Length = 410
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 154/327 (47%), Positives = 162/327 (49%), Gaps = 39/327 (11%)
Query: 12 QRPNFPLQLLGKKEEQTCSTS-------------QTXXXXXXXXXXXXXXXXXXPPKRTS 58
+RPNFPLQLL KKEEQ CS+S PKR+S
Sbjct: 13 RRPNFPLQLLEKKEEQPCSSSAAGGGTGPSSAGGNGNNGSGPGGAGGEMQLRKAAPKRSS 72
Query: 59 TKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 118
TKDRHTKV+GRGRRIRMPA+CAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT
Sbjct: 73 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 132
Query: 119 IPANFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAWDRVVGLGFGGAADAP 178
IPANFT DAWDRVV LGF A
Sbjct: 133 IPANFT-SLNISLRSSGSSLSAPAHLRALPSPAAAARFGSRADAWDRVVSLGFPSEGPA- 190
Query: 179 XXXXXXXXXXXXXXXXXXXVGLDVXXXXXXXXXXXXDLSRKRRWXXXX------------ 226
VGLDV DLSRKRRW
Sbjct: 191 --SSSSSPSPLLLNFHSGSVGLDV-QPSPSAAAAAADLSRKRRWEQEMQQQQQQQQQQQQ 247
Query: 227 XXXXXXXXXXAGYTQSQIPAGTVWMVPSSNAQ----XXXXXXXXXXXXESIWTFPQXXXX 282
AGYTQSQ+P GTVWMVPS++ Q ESIWTFPQ
Sbjct: 248 QQQQQYQQQMAGYTQSQMP-GTVWMVPSNSTQGGGPSGGGGGGGGGSGESIWTFPQ--MS 304
Query: 283 XXXXAATVYRG-VPSGLHFMNFPATPM 308
AA VYRG VPSGLHFMNFPA PM
Sbjct: 305 SAAAAAAVYRGSVPSGLHFMNFPA-PM 330
>Os12g0173333 TCP transcription factor family protein
Length = 418
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 61/66 (92%), Positives = 66/66 (100%)
Query: 59 TKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 118
+KDRHTKVDGRGRRIRMPA+CAARVFQLTRELGHK+DGETIEWLLQQAEPA+IAATGTGT
Sbjct: 109 SKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGT 168
Query: 119 IPANFT 124
IPANF+
Sbjct: 169 IPANFS 174
>Os01g0924400 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 317
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 68/69 (98%)
Query: 54 PKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAA 113
PKR+S KDRHTKVDGRGRRIRMPA+CAAR+FQLTRELGHK+DGET++WLLQQAEPA++AA
Sbjct: 82 PKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAA 141
Query: 114 TGTGTIPAN 122
TGTGTIPA+
Sbjct: 142 TGTGTIPAS 150
>Os11g0175700 Similar to Transcription factor PCF3 (Fragment)
Length = 419
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 61/66 (92%), Positives = 66/66 (100%)
Query: 59 TKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 118
TKDRHTKV+GRGRRIRMPA+CAARVFQLTRELGHKTDGETIEWLLQQAEPA++AATGTGT
Sbjct: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
Query: 119 IPANFT 124
IPANF+
Sbjct: 183 IPANFS 188
>Os08g0544800 PCF2
Length = 373
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 63/69 (91%), Gaps = 2/69 (2%)
Query: 53 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIA 112
PP R +DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHK+DGETI WLLQQ+EPA+IA
Sbjct: 71 PPPRN--RDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIA 128
Query: 113 ATGTGTIPA 121
ATGTGT+PA
Sbjct: 129 ATGTGTVPA 137
>Os02g0828566 TCP transcription factor family protein
Length = 236
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 63/67 (94%)
Query: 55 KRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAAT 114
++ +KDRH+KVDGRGRRIRMP ICAARVFQLTRELGHK+DG+TIEWLL+QAEP++IAAT
Sbjct: 33 RKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT 92
Query: 115 GTGTIPA 121
GTGT PA
Sbjct: 93 GTGTTPA 99
>Os09g0521300
Length = 381
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 61/72 (84%), Gaps = 2/72 (2%)
Query: 53 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIA 112
PP R +DRH KV+GRGRRIRMP CAAR+ QLTRELGHK+DGETI WL+QQ+EPA++A
Sbjct: 121 PPPRN--RDRHVKVEGRGRRIRMPVNCAARIAQLTRELGHKSDGETIRWLMQQSEPAIVA 178
Query: 113 ATGTGTIPANFT 124
ATGTGT+PA T
Sbjct: 179 ATGTGTVPAIAT 190
>Os04g0526000 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 206
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/64 (76%), Positives = 60/64 (93%)
Query: 60 KDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTI 119
KDRH+KV+GRGRR+RMP +CAARVFQLTRELG K+DG+TIEWLL+QAEP+++AATG+GT
Sbjct: 56 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTT 115
Query: 120 PANF 123
PA F
Sbjct: 116 PAVF 119
>Os04g0194600 Similar to PCF1
Length = 176
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 60/68 (88%)
Query: 53 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIA 112
P K S+ DRH+KV GRGRR+R+PA+ AARVFQLTRELGH+TDGETIEWLL+QAEP++IA
Sbjct: 43 PRKSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIA 102
Query: 113 ATGTGTIP 120
ATGTG P
Sbjct: 103 ATGTGVTP 110
>Os02g0635800 TCP transcription factor family protein
Length = 211
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 49/64 (76%), Positives = 59/64 (92%)
Query: 61 DRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIP 120
DRH+KV+GRGRR+RMP +CAARVFQLTRELG K+DG+TIEWLL+QAEP+++AATGTGT P
Sbjct: 56 DRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTP 115
Query: 121 ANFT 124
A F
Sbjct: 116 AAFV 119
>Os02g0641100
Length = 171
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 49/55 (89%)
Query: 54 PKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEP 108
PKR+S KDRHTKVDGRGRRIRMPA+CAA +FQLTREL HK++ ET++WLLQQ P
Sbjct: 34 PKRSSNKDRHTKVDGRGRRIRMPALCAAWIFQLTRELDHKSNSETVQWLLQQVAP 88
>Os01g0594401
Length = 165
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 41/44 (93%)
Query: 75 MPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 118
MPA+CAAR+FQLTRELGHK+DGET++WLLQQAEPA++ A GTG
Sbjct: 1 MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVTAMGTGV 44
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,940,577
Number of extensions: 167568
Number of successful extensions: 304
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 14
Length of query: 387
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 284
Effective length of database: 11,657,759
Effective search space: 3310803556
Effective search space used: 3310803556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)