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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0175700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor PCF3 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.53 (0.0382) R2 : 0.783
β1 : 0.82 (0.139) R2dD : 0.0173 R2D : -0.00769
β2 : 6.1 (0.258) R2dC : 1.82 R2C : 0.299
β3 : 2.89 (0.279) R2dE : 0.349 R2E : -1.14
β4 : 2.66 (0.454) R2dD*C : 0.0165 R2D*C : 0.00956
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.12 (0.0814) R2dN8 : 0.122 R2N8 : 0.051
σ : 0.715
deviance : 232.15
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_____
C
peak time of C : 17.2
E
wheather : humidity
threshold : 50.05
memory length : 9
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 23.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.22 0.716 4.53 0.798 6.07 2.87 1.7 -1.15 1.12 17.3 50.05 9 23.3 --
232.15 0.715 4.53 0.82 6.1 2.89 2.66 -- 1.12 17.2 50.05 9 23.3 --
232.3 0.715 4.54 0.761 6.51 3.29 -- -2.82 1.13 17.2 45.65 2 23.8 --
249.63 0.741 4.52 0.826 5.89 2.66 -- -- 1.13 17.3 50 2 23.1 --
299.99 0.807 4.43 1.02 -- -3.92 -- -1.56 1.05 -- -21.36 606 5.96 --
286.64 0.794 4.5 0.875 3.63 -- 2.2 -- 1.06 17.2 -- -- -- --
298.74 0.809 4.49 0.876 3.64 -- -- -- 1.07 17.2 -- -- -- --
300.29 0.807 4.43 0.889 -- -3.71 -- -- 1.06 -- -275.8 645 6.27 --
267.43 0.766 4.54 -- 6.03 2.81 -- -- 1.04 17.2 50.01 2 23.3 --
993.37 1.47 4.45 0.747 -- -- -- -- 0.98 -- -- -- -- --
318.95 0.835 4.51 -- 3.63 -- -- -- 0.975 17.2 -- -- -- --
320.13 0.833 4.47 -- -- -3.64 -- -- 0.968 -- -517 710 6.81 --
1008.09 1.48 4.47 -- -- -- -- -- 0.898 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.35 humidity 50 10 > th dose dependent rect. 1 16
20 231.86 radiation 1 30 > th dose dependent rect. 6 6
21 231.96 radiation 1 30 > th dose dependent rect. 17 19
38 232.65 humidity 50 10 > th dose dependent sin 5 NA
63 235.17 humidity 90 10 < th dose dependent rect. 20 16
115 236.82 radiation 40 10 < th dose independent rect. 1 16
119 236.98 radiation 40 30 < th dose dependent rect. 1 15
140 238.07 radiation 1 30 > th dose dependent sin 6 NA
141 238.09 humidity 90 10 < th dose dependent rect. 23 13
172 239.02 humidity 90 10 < th dose dependent sin 6 NA
223 240.24 radiation 40 30 < th dose dependent sin 5 NA
230 240.33 humidity 90 10 < th dose independent rect. 4 9
231 240.39 radiation 40 10 < th dose independent rect. 1 18
242 240.80 humidity 90 10 < th dose independent rect. 20 16
243 240.80 humidity 90 10 < th dose dependent rect. 6 6
249 240.98 humidity 90 10 < th dose dependent rect. 4 8
373 242.95 humidity 80 10 > th dose independent rect. 1 15
398 243.41 humidity 70 10 > th dose dependent rect. 22 19
427 243.75 radiation 20 30 > th dose independent rect. 8 4
481 244.03 humidity 90 30 < th dose independent rect. 6 6
482 244.05 radiation 20 30 > th dose independent rect. 16 20
589 245.02 humidity 90 10 < th dose independent rect. 24 13
677 246.13 humidity 80 10 < th dose independent rect. 9 3
742 246.83 wind 7 90 < th dose independent rect. 19 17
749 246.88 radiation 20 30 < th dose independent rect. 1 15
799 247.21 humidity 90 10 > th dose independent sin 3 NA
806 247.30 radiation 1 270 < th dose independent rect. 22 16
815 247.39 humidity 90 10 < th dose independent sin 3 NA
831 247.55 humidity 60 90 > th dose independent rect. 1 16
890 247.85 radiation 40 10 > th dose independent rect. 14 22