BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0175700 Os11g0175700|AB071804
(419 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G58100.1 | chr1:21512680-21513885 REVERSE LENGTH=402 136 3e-32
AT1G72010.1 | chr1:27107844-27108971 FORWARD LENGTH=376 135 3e-32
AT1G69690.1 | chr1:26216449-26217426 FORWARD LENGTH=326 133 1e-31
AT3G47620.1 | chr3:17559004-17560473 FORWARD LENGTH=490 132 3e-31
AT1G35560.1 | chr1:13116099-13117124 REVERSE LENGTH=342 130 1e-30
AT2G45680.1 | chr2:18820717-18821787 REVERSE LENGTH=357 125 4e-29
AT3G27010.1 | chr3:9957810-9958754 REVERSE LENGTH=315 125 4e-29
AT5G23280.1 | chr5:7843017-7843769 FORWARD LENGTH=251 120 1e-27
AT5G08330.1 | chr5:2680828-2681547 FORWARD LENGTH=240 120 1e-27
AT5G51910.1 | chr5:21094704-21095585 REVERSE LENGTH=294 120 1e-27
AT5G41030.1 | chr5:16428706-16429437 FORWARD LENGTH=244 108 6e-24
AT2G37000.1 | chr2:15540390-15540956 FORWARD LENGTH=189 108 7e-24
AT3G45150.1 | chr3:16531179-16531676 FORWARD LENGTH=166 87 2e-17
>AT1G58100.1 | chr1:21512680-21513885 REVERSE LENGTH=402
Length = 401
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 65/66 (98%)
Query: 121 RPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGT 180
R TKDRHTKV+GRGRRIRMPALCAARVFQLTRELGHK+DGETIEWLLQQAEPAIVAATGT
Sbjct: 58 RSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGT 117
Query: 181 GTIPAN 186
GTIPAN
Sbjct: 118 GTIPAN 123
>AT1G72010.1 | chr1:27107844-27108971 FORWARD LENGTH=376
Length = 375
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/66 (90%), Positives = 66/66 (100%)
Query: 121 RPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGT 180
+PTKDRHTKV+GRGRRIRMPA+CAARVFQLTRELGHK+DGETIEWLLQQAEPAI+A+TGT
Sbjct: 61 KPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGT 120
Query: 181 GTIPAN 186
GTIPAN
Sbjct: 121 GTIPAN 126
>AT1G69690.1 | chr1:26216449-26217426 FORWARD LENGTH=326
Length = 325
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/64 (93%), Positives = 64/64 (100%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
TKDRHTKVEGRGRRIRMPA+CAARVFQLTRELGHK+DGETIEWLLQQAEPA++AATGTGT
Sbjct: 52 TKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGT 111
Query: 183 IPAN 186
IPAN
Sbjct: 112 IPAN 115
>AT3G47620.1 | chr3:17559004-17560473 FORWARD LENGTH=490
Length = 489
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 64/64 (100%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
TKDRHTKV+GRGRRIRMPALCAARVFQLTRELGHK+DGETIEWLLQQAEP+++AATGTGT
Sbjct: 117 TKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGT 176
Query: 183 IPAN 186
IPAN
Sbjct: 177 IPAN 180
>AT1G35560.1 | chr1:13116099-13117124 REVERSE LENGTH=342
Length = 341
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/66 (89%), Positives = 64/66 (96%)
Query: 121 RPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGT 180
RP+KDRH KV+GRGRRIRMPA+CAARVFQLTREL HK+DGETIEWLLQQAEPAI+AATGT
Sbjct: 53 RPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGT 112
Query: 181 GTIPAN 186
GTIPAN
Sbjct: 113 GTIPAN 118
>AT2G45680.1 | chr2:18820717-18821787 REVERSE LENGTH=357
Length = 356
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/63 (87%), Positives = 60/63 (95%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
TKDRHTKVEGRGRRIRMPA CAAR+FQLTRELGHK+DGETI WLL+ AEPAI+AATGTGT
Sbjct: 75 TKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGT 134
Query: 183 IPA 185
+PA
Sbjct: 135 VPA 137
>AT3G27010.1 | chr3:9957810-9958754 REVERSE LENGTH=315
Length = 314
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/62 (88%), Positives = 61/62 (98%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
KDRHTKVEGRGRRIRMPALCAAR+FQLTRELGHK+DGETI+WLLQQAEP+I+AATG+GT
Sbjct: 78 NKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGT 137
Query: 183 IP 184
IP
Sbjct: 138 IP 139
>AT5G23280.1 | chr5:7843017-7843769 FORWARD LENGTH=251
Length = 250
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 62/65 (95%)
Query: 122 PTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTG 181
P KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHK+DG+TIEWLL+QAEP+I+AATGTG
Sbjct: 38 PAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTG 97
Query: 182 TIPAN 186
T PA+
Sbjct: 98 TTPAS 102
>AT5G08330.1 | chr5:2680828-2681547 FORWARD LENGTH=240
Length = 239
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 63/65 (96%)
Query: 122 PTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTG 181
P+KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHK+DG+TIEWLL+QAEP+I+AATGTG
Sbjct: 30 PSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTG 89
Query: 182 TIPAN 186
T PA+
Sbjct: 90 TTPAS 94
>AT5G51910.1 | chr5:21094704-21095585 REVERSE LENGTH=294
Length = 293
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 62/66 (93%), Gaps = 1/66 (1%)
Query: 121 RPT-KDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATG 179
RPT KDRHTKVEGRGRRIRMPA CAARVFQLTRELGHK+DGETI WLL++AEPAI+ ATG
Sbjct: 54 RPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATG 113
Query: 180 TGTIPA 185
TGT+PA
Sbjct: 114 TGTVPA 119
>AT5G41030.1 | chr5:16428706-16429437 FORWARD LENGTH=244
Length = 243
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 56/65 (86%)
Query: 121 RPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGT 180
+P KDRH KVEGRGRR+R+P LCAAR++QLT+ELGHK+DGET+EWLLQ AEP+I++AT
Sbjct: 66 KPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAEPSILSATVN 125
Query: 181 GTIPA 185
G P
Sbjct: 126 GIKPT 130
>AT2G37000.1 | chr2:15540390-15540956 FORWARD LENGTH=189
Length = 188
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 54/60 (90%)
Query: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
TKDRHTKV GR RR+ MPAL AAR+FQLTRELGHKT+GETIEWLL QAEP+I+AATG GT
Sbjct: 43 TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATGYGT 102
>AT3G45150.1 | chr3:16531179-16531676 FORWARD LENGTH=166
Length = 165
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 47/61 (77%)
Query: 121 RPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGT 180
R KDRH K+ GR RRIR+P A ++F+LT+ELG KTDGET+ WLLQ AEPAI AATG
Sbjct: 15 RTPKDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAEPAIFAATGH 74
Query: 181 G 181
G
Sbjct: 75 G 75
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.130 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,415,031
Number of extensions: 101035
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 13
Length of query: 419
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 318
Effective length of database: 8,337,553
Effective search space: 2651341854
Effective search space used: 2651341854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)