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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0747400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PCF1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.97 (0.0666) R2 : 0.635
β1 : -5.98 (0.499) R2dD : 1.37 R2D : -0.206
β2 : 0.797 (0.0985) R2dC : 0.0532 R2C : 0.051
β3 : -3 (0.288) R2dE : 0.747 R2E : -0.704
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 18.3 (2.4) R2dD*E : 0.792 R2D*E : -1.39
γ1 : 1.57 (0.0889) R2dN8 : 0.356 R2N8 : 0.2
σ : 0.754
deviance : 262.1
__
_____
C
peak time of C : 21.8
E
wheather : temperature
threshold : 30.6
memory length : 5418
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
261.69 0.76 4.97 -5.97 0.797 -3 0.331 18.3 1.57 21.8 30.6 5416 -- --
287.54 0.79 4.86 -4.7 0.811 -2.67 0.385 -- 0.464 21.9 20.7 16414 -- --
262.1 0.754 4.97 -5.98 0.797 -3 -- 18.3 1.57 21.8 30.6 5418 -- --
279.95 0.779 4.8 -3.92 0.766 -2.05 -- -- 0.582 21.7 20.9 16182 -- --
298.06 0.804 4.95 -6.01 -- -3.12 -- 18.8 1.62 -- 30.7 5344 -- --
341.55 0.866 4.61 -2.07 0.804 -- 0.559 -- 1.43 22.2 -- -- -- --
342.8 0.867 4.62 -2.09 0.801 -- -- -- 1.43 22.2 -- -- -- --
314.71 0.826 4.78 -3.88 -- -1.99 -- -- 0.641 -- 20.9 16650 -- --
441.89 0.979 4.62 -- 0.49 -0.849 -- -- 1.39 21.6 25.5 964 -- --
381.77 0.913 4.59 -2.08 -- -- -- -- 1.43 -- -- -- -- --
458.01 1 4.56 -- 0.791 -- -- -- 1.66 22 -- -- -- --
452.93 0.991 4.62 -- -- -0.956 -- -- 1.33 -- 25.49 808 -- --
495.78 1.04 4.54 -- -- -- -- -- 1.66 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 250.58 radiation 1 14400 < th dose dependent rect. 4 1
2 250.77 radiation 1 14400 < th dose dependent rect. 2 3
5 256.26 humidity 60 43200 < th dose independent rect. 11 1
7 258.03 radiation 10 43200 < th dose independent rect. 6 1
8 259.42 temperature 25 4320 > th dose dependent rect. 1 8
10 259.79 wind 7 43200 < th dose independent rect. 12 3
12 259.80 wind 7 43200 > th dose independent rect. 12 3
13 260.02 radiation 10 43200 < th dose independent rect. 17 15
18 260.18 wind 7 43200 < th dose independent rect. 13 1
20 260.62 wind 1 43200 < th dose dependent rect. 24 4
21 260.96 wind 5 43200 > th dose dependent rect. 12 3
22 261.03 radiation 10 43200 < th dose independent rect. 24 7
24 261.03 radiation 10 43200 < th dose independent rect. 19 12
38 261.71 temperature 25 4320 > th dose independent rect. 4 4
40 262.10 humidity 60 43200 > th dose independent rect. 24 12
42 262.12 temperature 25 4320 < th dose independent rect. 4 4
63 262.78 temperature 25 4320 > th dose independent rect. 3 6
69 262.94 radiation 40 43200 < th dose independent rect. 15 20
94 263.84 humidity 60 43200 < th dose independent rect. 24 12
95 263.85 humidity 70 43200 < th dose dependent rect. 24 11
97 263.89 humidity 60 43200 > th dose independent rect. 8 4
137 264.71 humidity 60 43200 > th dose independent rect. 10 1
155 264.86 radiation 40 43200 < th dose independent rect. 10 1
160 264.95 radiation 1 14400 < th dose dependent rect. 21 8
180 265.14 radiation 40 43200 > th dose dependent rect. 10 1
213 266.45 radiation 40 43200 < th dose independent rect. 7 4
218 266.46 radiation 40 43200 < th dose independent rect. 19 16
221 266.47 radiation 40 43200 < th dose independent rect. 3 8
222 266.47 radiation 40 43200 < th dose independent rect. 24 11
242 267.17 radiation 1 43200 > th dose dependent rect. 5 1
245 267.23 temperature 20 14400 < th dose dependent rect. 21 4
247 267.34 radiation 40 43200 < th dose independent sin 11 NA
267 267.65 wind 1 43200 < th dose dependent rect. 1 1
274 267.81 radiation 10 43200 < th dose independent sin 10 NA
275 267.82 temperature 25 4320 > th dose dependent rect. 8 1
283 267.98 temperature 20 14400 < th dose dependent rect. 18 9
284 268.02 radiation 10 43200 < th dose independent rect. 17 1
286 268.05 temperature 20 14400 < th dose dependent rect. 13 14
293 268.09 temperature 30 4320 > th dose dependent rect. 15 1
294 268.10 wind 5 14400 > th dose independent rect. 10 2
318 268.23 wind 5 14400 < th dose independent rect. 10 2
354 268.60 radiation 20 43200 < th dose independent rect. 15 6
356 268.61 radiation 20 43200 < th dose independent rect. 15 10
372 268.67 temperature 20 14400 < th dose dependent sin 15 NA
417 269.10 humidity 60 43200 < th dose independent sin 8 NA
470 269.48 radiation 1 43200 > th dose dependent rect. 18 13
477 269.58 wind 5 43200 < th dose dependent rect. 21 1
488 269.73 radiation 40 43200 > th dose dependent rect. 15 20
489 269.74 radiation 40 43200 < th dose independent rect. 14 7
491 269.75 radiation 40 43200 < th dose independent rect. 14 12
510 269.86 wind 1 43200 < th dose dependent rect. 8 1
514 269.95 radiation 40 43200 > th dose dependent rect. 7 4
554 270.13 radiation 10 43200 < th dose dependent rect. 18 13
568 270.25 temperature 20 14400 > th dose independent rect. 4 1
571 270.27 temperature 20 14400 < th dose independent rect. 4 1
580 270.46 temperature 20 14400 < th dose independent rect. 1 2
595 270.56 wind 3 43200 > th dose independent rect. 21 1
616 270.77 temperature 25 4320 > th dose dependent sin 9 NA
683 271.23 temperature 20 14400 > th dose independent rect. 24 5
724 271.40 wind 5 14400 > th dose dependent rect. 24 15
765 271.53 temperature 20 14400 < th dose dependent rect. 18 22
768 271.55 temperature 20 14400 > th dose independent rect. 1 1
771 271.55 temperature 20 14400 < th dose dependent rect. 20 23
781 271.59 temperature 20 14400 < th dose dependent rect. 20 20
801 271.62 temperature 20 14400 < th dose dependent no NA NA
890 271.90 temperature 20 14400 < th dose dependent rect. 2 23
905 271.98 temperature 20 14400 < th dose dependent rect. 23 23
949 272.20 temperature 30 4320 < th dose independent rect. 15 21
965 272.29 radiation 20 43200 > th dose dependent rect. 16 17
969 272.31 wind 7 43200 < th dose independent rect. 5 10