BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0747400 Os02g0747400|AK068818
(410 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0747400 Similar to PCF1 408 e-114
Os06g0226700 Similar to PCF1 247 1e-65
Os11g0175700 Similar to Transcription factor PCF3 (Fragment) 138 1e-32
Os01g0924400 Similar to Auxin-induced basic helix-loop-heli... 137 1e-32
Os12g0173333 TCP transcription factor family protein 135 6e-32
Os08g0544800 PCF2 124 2e-28
Os02g0828566 TCP transcription factor family protein 119 4e-27
Os04g0194600 Similar to PCF1 115 7e-26
Os09g0521300 114 1e-25
Os04g0526000 Similar to Auxin-induced basic helix-loop-heli... 112 3e-25
Os02g0635800 TCP transcription factor family protein 110 1e-24
Os02g0641100 96 4e-20
Os01g0594401 83 4e-16
>Os02g0747400 Similar to PCF1
Length = 410
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/410 (56%), Positives = 233/410 (56%)
Query: 1 MTMDVAGDAGGGRRPNFPLQLLEKKEEQPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE 60
MTMDVAGDAGGGRRPNFPLQLLEKKEEQPC E
Sbjct: 1 MTMDVAGDAGGGRRPNFPLQLLEKKEEQPCSSSAAGGGTGPSSAGGNGNNGSGPGGAGGE 60
Query: 61 MQLRKAAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQA 120
MQLRKAAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQA
Sbjct: 61 MQLRKAAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQA 120
Query: 121 EPAVIAATGTGTIPANFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDRVV 180
EPAVIAATGTGTIPANFT WDRVV
Sbjct: 121 EPAVIAATGTGTIPANFTSLNISLRSSGSSLSAPAHLRALPSPAAAARFGSRADAWDRVV 180
Query: 181 SLGFXXXXXXXXXXXXXXLLLNFHSGSVGLDVQPSPSXXXXXXDLSRKRRWEQEMXXXXX 240
SLGF LLLNFHSGSVGLDVQPSPS DLSRKRRWEQEM
Sbjct: 181 SLGFPSEGPASSSSSPSPLLLNFHSGSVGLDVQPSPSAAAAAADLSRKRRWEQEMQQQQQ 240
Query: 241 XXXXXXXXXXXXXXXXMAGYTQSQMPGTVWMVPSNSTQXXXXXXXXXXXXXXXXESIWTF 300
MAGYTQSQMPGTVWMVPSNSTQ ESIWTF
Sbjct: 241 QQQQQQQQQQQQYQQQMAGYTQSQMPGTVWMVPSNSTQGGGPSGGGGGGGGGSGESIWTF 300
Query: 301 PQMSSXXXXXXVYRGSVPSGLHFMNFPAPMAXXXXXXXXXXXXXXXXXXXXXXXXHMGIL 360
PQMSS VYRGSVPSGLHFMNFPAPMA HMGIL
Sbjct: 301 PQMSSAAAAAAVYRGSVPSGLHFMNFPAPMALLPGQQLGLGPVGGGGGGGGGGEGHMGIL 360
Query: 361 AALNAYRTQAATDAAXXXXXXXXXXXXXXXXXXXXXXXXERHQSISTSDS 410
AALNAYRTQAATDAA ERHQSISTSDS
Sbjct: 361 AALNAYRTQAATDAAGQQGGGGGGGGSSQQQHGGGGGGGERHQSISTSDS 410
>Os06g0226700 Similar to PCF1
Length = 387
Score = 247 bits (631), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 176/364 (48%), Positives = 184/364 (50%), Gaps = 44/364 (12%)
Query: 13 RRPNFPLQLLEKKEEQPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMQLRKAAPKRSS 72
+RPNFPLQLL KKEEQ C A PKR+S
Sbjct: 12 QRPNFPLQLLGKKEEQTCSTSQTAGAGGGGVVGANGSAAA-------------APPKRTS 58
Query: 73 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 132
TKDRHTKV+GRGRRIRMPA+CAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT
Sbjct: 59 TKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 118
Query: 133 IPANFTXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXWDRVVSLGF---XXXX 188
IPANFT WDRVV LGF
Sbjct: 119 IPANFTSLNISLRSSGSSLSIPSHLRLAGLAGPRFGGGARAADAWDRVVGLGFGGAADAP 178
Query: 189 XXXXXXXXXXLLLNFHSGSVGLDVQ-PSPSXXXXXXDLSRKRRWEQEMXXXXXXXXXXXX 247
LLL+FHSGSVGLDV PS S DLSRKRRWEQEM
Sbjct: 179 SSATSSSSSPLLLSFHSGSVGLDVSPPSASTSPAAADLSRKRRWEQEM------------ 226
Query: 248 XXXXXXXXXMAGYTQSQMP-GTVWMVPSNSTQXXXXXXXXXXXXXXXXESIWTFPQ--MS 304
MAGYTQSQ+P GTVWMVPS++ Q ESIWTFPQ
Sbjct: 227 QQQQQYQQQMAGYTQSQIPAGTVWMVPSSNAQ----AAGGGAPPGGGGESIWTFPQSGSG 282
Query: 305 SXXXXXXVYRGSVPSGLHFMNFPA-PMAXXXXXXXXXXXXXXXXXXXXXXXXHMGILAAL 363
VYRG VPSGLHFMNFPA PMA H GILAAL
Sbjct: 283 GGGGAATVYRG-VPSGLHFMNFPATPMA-----LLPGGQQLGLAGAGGGGEGHPGILAAL 336
Query: 364 NAYR 367
NAYR
Sbjct: 337 NAYR 340
>Os11g0175700 Similar to Transcription factor PCF3 (Fragment)
Length = 419
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 66/66 (100%)
Query: 73 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 132
TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPA++AATGTGT
Sbjct: 123 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
Query: 133 IPANFT 138
IPANF+
Sbjct: 183 IPANFS 188
>Os01g0924400 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 317
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/77 (79%), Positives = 72/77 (93%)
Query: 60 EMQLRKAAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQ 119
E +++ PKRSS KDRHTKV+GRGRRIRMPALCAAR+FQLTRELGHK+DGET++WLLQQ
Sbjct: 74 ERRMQGLGPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQ 133
Query: 120 AEPAVIAATGTGTIPAN 136
AEPA++AATGTGTIPA+
Sbjct: 134 AEPAIVAATGTGTIPAS 150
>Os12g0173333 TCP transcription factor family protein
Length = 418
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 61/66 (92%), Positives = 66/66 (100%)
Query: 73 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 132
+KDRHTKV+GRGRRIRMPALCAARVFQLTRELGHK+DGETIEWLLQQAEPA+IAATGTGT
Sbjct: 109 SKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGT 168
Query: 133 IPANFT 138
IPANF+
Sbjct: 169 IPANFS 174
>Os08g0544800 PCF2
Length = 373
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 66/76 (86%), Gaps = 3/76 (3%)
Query: 63 LRKAAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEP 122
+RK P+ +DRHTKVEGRGRRIRMPA CAAR+FQLTRELGHK+DGETI WLLQQ+EP
Sbjct: 68 VRKPPPR---NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEP 124
Query: 123 AVIAATGTGTIPANFT 138
A+IAATGTGT+PA T
Sbjct: 125 AIIAATGTGTVPAIAT 140
>Os02g0828566 TCP transcription factor family protein
Length = 236
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 64/69 (92%)
Query: 67 APKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIA 126
A ++ +KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHK+DG+TIEWLL+QAEP++IA
Sbjct: 31 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIA 90
Query: 127 ATGTGTIPA 135
ATGTGT PA
Sbjct: 91 ATGTGTTPA 99
>Os04g0194600 Similar to PCF1
Length = 176
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 64/72 (88%), Gaps = 1/72 (1%)
Query: 64 RKAAPKRS-STKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEP 122
R+ P++S S+ DRH+KV GRGRR+R+PA+ AARVFQLTRELGH+TDGETIEWLL+QAEP
Sbjct: 39 RRVRPRKSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEP 98
Query: 123 AVIAATGTGTIP 134
++IAATGTG P
Sbjct: 99 SIIAATGTGVTP 110
>Os09g0521300
Length = 381
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 58/66 (87%)
Query: 73 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 132
+DRH KVEGRGRRIRMP CAAR+ QLTRELGHK+DGETI WL+QQ+EPA++AATGTGT
Sbjct: 125 NRDRHVKVEGRGRRIRMPVNCAARIAQLTRELGHKSDGETIRWLMQQSEPAIVAATGTGT 184
Query: 133 IPANFT 138
+PA T
Sbjct: 185 VPAIAT 190
>Os04g0526000 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 206
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Query: 64 RKAAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPA 123
RKAA + KDRH+KV GRGRR+RMP +CAARVFQLTRELG K+DG+TIEWLL+QAEP+
Sbjct: 47 RKAAATQGG-KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPS 105
Query: 124 VIAATGTGTIPANF 137
++AATG+GT PA F
Sbjct: 106 ILAATGSGTTPAVF 119
>Os02g0635800 TCP transcription factor family protein
Length = 211
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/64 (76%), Positives = 58/64 (90%)
Query: 75 DRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIP 134
DRH+KV GRGRR+RMP +CAARVFQLTRELG K+DG+TIEWLL+QAEP+++AATGTGT P
Sbjct: 56 DRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTP 115
Query: 135 ANFT 138
A F
Sbjct: 116 AAFV 119
>Os02g0641100
Length = 171
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 49/56 (87%)
Query: 67 APKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEP 122
PKRSS KDRHTKV+GRGRRIRMPALCAA +FQLTREL HK++ ET++WLLQQ P
Sbjct: 33 GPKRSSNKDRHTKVDGRGRRIRMPALCAAWIFQLTRELDHKSNSETVQWLLQQVAP 88
>Os01g0594401
Length = 165
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 41/44 (93%)
Query: 89 MPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 132
MPALCAAR+FQLTRELGHK+DGET++WLLQQAEPA++ A GTG
Sbjct: 1 MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVTAMGTGV 44
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.129 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,248,283
Number of extensions: 201821
Number of successful extensions: 394
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 14
Length of query: 410
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 307
Effective length of database: 11,657,759
Effective search space: 3578932013
Effective search space used: 3578932013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)