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Os04g0194600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PCF1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0155) R2 : 0.859
β1 : 1.27 (0.0567) R2dD : 0.162 R2D : 0.115
β2 : 0.876 (0.0539) R2dC : 0.158 R2C : 0.435
β3 : -1.3 (0.059) R2dE : 0.289 R2E : 0.55
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.21 (0.0331) R2dN8 : 0.0169 R2N8 : -0.0155
σ : 0.289
deviance : 38.51
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C
peak time of C : 15.8
E
wheather : wind
threshold : 4.6
memory length : 263
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.12
open length of G : 4.62

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.88 0.289 10.5 1.24 0.849 -1.25 -0.627 -0.688 0.208 15.5 4.496 251 1.1 5.08
38.57 0.289 10.5 1.29 0.854 -1.24 -0.292 -- 0.208 15.6 4.902 236 1.23 5
38.64 0.29 10.5 1.25 0.864 -1.24 -- -0.265 0.208 15.6 4.453 250 1.12 5.03
38.51 0.289 10.5 1.27 0.876 -1.3 -- -- 0.21 15.8 4.6 263 1.12 4.62
60.73 0.363 10.5 1.34 -- -1.54 -- -0.119 0.252 -- 5.799 152 1.12 5.93
70.09 0.392 10.5 1.2 1.78 -- 0.118 -- 0.152 16.7 -- -- -- --
70.13 0.392 10.5 1.2 1.78 -- -- -- 0.152 16.6 -- -- -- --
56.03 0.349 10.5 1.23 -- -1.61 -- -- 0.244 -- 5.8 220 0.0161 6.73
80.96 0.419 10.5 -- 0.924 -1.12 -- -- 0.0891 15.8 5.273 231 1.37 4.9
238.7 0.722 10.5 1.13 -- -- -- -- 0.106 -- -- -- -- --
108.14 0.486 10.5 -- 1.76 -- -- -- 0.0186 16.7 -- -- -- --
97.84 0.461 10.5 -- -- -1.57 -- -- 0.127 -- 5.8 218 0.0124 6.74
272.55 0.771 10.5 -- -- -- -- -- -0.0199 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.20 wind 5.0 270 < th dose independent rect. 1 5
2 38.67 precipitation 0.1 270 < th dose independent rect. 1 5
3 38.67 precipitation 0.1 270 < th dose dependent rect. 1 5
4 38.89 wind 5.0 270 < th dose independent rect. 2 3
5 38.95 wind 9.0 270 < th dose dependent rect. 1 5
7 39.05 temperature 10.0 270 > th dose dependent rect. 1 5
8 39.13 radiation 10.0 270 < th dose independent rect. 1 5
9 39.16 wind 9.0 270 < th dose independent rect. 6 19
10 39.22 atmosphere 1010.0 270 < th dose independent rect. 1 5
11 39.37 precipitation 0.1 270 < th dose independent rect. 2 3
13 39.37 precipitation 0.1 270 < th dose dependent rect. 2 3
14 39.38 temperature 10.0 270 > th dose independent rect. 1 5
16 39.38 temperature 30.0 270 < th dose independent rect. 1 5
17 39.38 humidity 50.0 270 > th dose independent rect. 1 5
20 39.38 atmosphere 995.0 270 > th dose independent rect. 1 5
25 39.38 temperature 10.0 270 > th dose independent rect. 6 19
26 39.39 radiation 40.0 270 < th dose dependent rect. 1 5
29 39.44 wind 9.0 270 < th dose dependent rect. 2 3
36 39.89 wind 9.0 270 < th dose independent rect. 5 21
37 40.04 precipitation 0.1 270 < th dose independent rect. 6 19
38 40.04 precipitation 0.1 270 < th dose dependent rect. 6 19
39 40.07 temperature 10.0 270 > th dose dependent rect. 2 3
40 40.09 radiation 1.0 270 < th dose dependent rect. 2 3
42 40.11 temperature 10.0 270 > th dose independent rect. 2 3
44 40.11 temperature 30.0 270 < th dose independent rect. 2 3
45 40.11 humidity 50.0 270 > th dose independent rect. 2 3
48 40.11 atmosphere 995.0 270 > th dose independent rect. 2 3
49 40.11 atmosphere 1010.0 270 < th dose independent rect. 2 3
51 40.11 radiation 1.0 270 < th dose independent rect. 2 3
56 40.11 temperature 10.0 270 > th dose independent rect. 5 21
104 41.24 atmosphere 995.0 270 > th dose independent rect. 6 19
107 41.30 precipitation 0.1 270 < th dose independent rect. 5 21
108 41.30 precipitation 0.1 270 < th dose dependent rect. 5 21
111 41.37 humidity 50.0 270 > th dose dependent rect. 2 3
115 41.41 humidity 50.0 270 > th dose dependent rect. 1 5
314 43.12 radiation 1.0 270 < th dose independent rect. 1 11
327 43.25 radiation 1.0 270 < th dose dependent rect. 1 16
333 43.35 radiation 1.0 270 < th dose dependent rect. 1 11
351 43.47 temperature 15.0 270 > th dose independent rect. 10 10
357 43.53 temperature 15.0 270 > th dose independent rect. 1 17
361 43.58 wind 7.0 10 < th dose dependent rect. 3 5
371 43.69 wind 1.0 270 > th dose independent rect. 3 1
372 43.69 wind 7.0 270 < th dose independent rect. 17 8
384 43.82 wind 1.0 270 > th dose independent rect. 1 4
385 43.83 precipitation 0.1 270 < th dose independent rect. 1 17
386 43.83 precipitation 0.1 270 < th dose dependent rect. 1 17
466 44.32 wind 5.0 10 < th dose independent rect. 3 5
468 44.34 atmosphere 995.0 270 > th dose independent rect. 18 7
478 44.41 radiation 10.0 270 < th dose independent rect. 18 7
481 44.42 radiation 10.0 270 < th dose dependent rect. 18 7
493 44.44 precipitation 0.1 270 < th dose independent rect. 18 7
496 44.44 precipitation 0.1 270 < th dose dependent rect. 18 7
497 44.45 temperature 10.0 270 > th dose independent rect. 18 7
498 44.45 humidity 50.0 270 > th dose independent rect. 18 7
504 44.45 atmosphere 1015.0 270 < th dose independent rect. 1 17
507 44.49 atmosphere 1010.0 270 < th dose independent rect. 11 9
513 44.51 precipitation 0.1 10 < th dose independent rect. 3 5
515 44.51 precipitation 0.1 10 < th dose dependent rect. 3 5
542 44.70 atmosphere 1015.0 270 < th dose dependent rect. 2 3
546 44.78 temperature 10.0 270 > th dose independent rect. 5 8
547 44.78 atmosphere 995.0 270 > th dose independent rect. 5 8
548 44.78 atmosphere 1015.0 270 < th dose independent rect. 5 8
549 44.78 temperature 10.0 270 > th dose independent rect. 13 16
593 44.90 wind 1.0 270 > th dose independent rect. 6 19
597 44.92 precipitation 0.1 270 < th dose independent rect. 5 8
598 44.92 wind 9.0 270 < th dose independent rect. 1 17
600 44.92 precipitation 0.1 270 < th dose dependent rect. 5 8
603 44.93 radiation 30.0 10 < th dose independent rect. 3 5
612 44.96 temperature 10.0 270 > th dose independent rect. 20 14
613 44.96 atmosphere 995.0 270 > th dose independent rect. 20 14
615 44.97 humidity 50.0 270 > th dose independent rect. 20 14
623 44.99 wind 9.0 270 < th dose independent rect. 20 14
635 45.11 humidity 70.0 10 > th dose independent rect. 3 5
639 45.15 wind 9.0 270 < th dose independent rect. 5 8
661 45.21 temperature 10.0 10 > th dose dependent rect. 3 5
667 45.25 temperature 10.0 10 > th dose independent rect. 3 5
669 45.25 temperature 30.0 10 < th dose independent rect. 3 5
670 45.25 humidity 50.0 10 > th dose independent rect. 3 5
672 45.25 atmosphere 995.0 10 > th dose independent rect. 3 5
673 45.25 atmosphere 1015.0 10 < th dose independent rect. 3 5
674 45.25 temperature 10.0 10 > th dose independent rect. 8 19
678 45.28 precipitation 0.1 270 < th dose independent rect. 13 16
680 45.28 precipitation 0.1 270 < th dose dependent rect. 13 16
682 45.32 precipitation 0.1 10 < th dose independent rect. 8 19
683 45.32 wind 9.0 270 < th dose dependent rect. 17 8
684 45.32 precipitation 0.1 10 < th dose dependent rect. 8 19
699 45.39 humidity 50.0 270 > th dose independent rect. 6 19
729 45.49 wind 9.0 10 < th dose independent rect. 8 19
752 45.61 wind 9.0 270 < th dose independent rect. 13 16
753 45.61 wind 9.0 270 < th dose dependent rect. 6 19
755 45.62 temperature 30.0 270 < th dose independent rect. 19 6
764 45.62 humidity 50.0 270 > th dose independent rect. 5 8
766 45.62 precipitation 0.1 270 < th dose independent rect. 10 10
777 45.62 precipitation 0.1 270 < th dose dependent rect. 10 10
781 45.63 humidity 50.0 270 > th dose dependent rect. 18 7
785 45.65 humidity 50.0 270 > th dose independent rect. 6 6
793 45.69 wind 1.0 270 > th dose independent rect. 7 17
816 45.78 atmosphere 1015.0 270 < th dose independent rect. 12 18
817 45.78 atmosphere 995.0 270 > th dose dependent rect. 2 3
832 45.83 radiation 1.0 270 < th dose dependent sin 3 NA
873 46.00 radiation 1.0 270 < th dose dependent rect. 5 20
876 46.01 wind 9.0 270 < th dose independent rect. 10 10
920 46.18 radiation 40.0 270 < th dose independent rect. 13 16
939 46.21 radiation 40.0 90 < th dose independent rect. 13 18
945 46.22 humidity 50.0 10 > th dose dependent rect. 3 5
959 46.28 atmosphere 995.0 10 > th dose independent rect. 8 19
961 46.31 atmosphere 995.0 270 > th dose independent rect. 1 16
978 46.38 atmosphere 1015.0 270 < th dose independent rect. 6 19