BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0194600 Os04g0194600|AK100180
(176 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G69690.1 | chr1:26216449-26217426 FORWARD LENGTH=326 102 1e-22
AT3G47620.1 | chr3:17559004-17560473 FORWARD LENGTH=490 101 2e-22
AT1G72010.1 | chr1:27107844-27108971 FORWARD LENGTH=376 100 4e-22
AT5G23280.1 | chr5:7843017-7843769 FORWARD LENGTH=251 100 4e-22
AT1G58100.1 | chr1:21512680-21513885 REVERSE LENGTH=402 100 6e-22
AT5G08330.1 | chr5:2680828-2681547 FORWARD LENGTH=240 100 7e-22
AT3G27010.1 | chr3:9957810-9958754 REVERSE LENGTH=315 99 2e-21
AT1G35560.1 | chr1:13116099-13117124 REVERSE LENGTH=342 96 8e-21
AT2G45680.1 | chr2:18820717-18821787 REVERSE LENGTH=357 95 2e-20
AT2G37000.1 | chr2:15540390-15540956 FORWARD LENGTH=189 93 9e-20
AT5G51910.1 | chr5:21094704-21095585 REVERSE LENGTH=294 92 2e-19
AT5G41030.1 | chr5:16428706-16429437 FORWARD LENGTH=244 87 3e-18
AT3G45150.1 | chr3:16531179-16531676 FORWARD LENGTH=166 80 4e-16
>AT1G69690.1 | chr1:26216449-26217426 FORWARD LENGTH=326
Length = 325
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 51/54 (94%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+PAM AARVFQLTRELGH++DGETIEWLL+QAEP++IAATGTG
Sbjct: 58 KVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGT 111
>AT3G47620.1 | chr3:17559004-17560473 FORWARD LENGTH=490
Length = 489
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 51/54 (94%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+PA+ AARVFQLTRELGH++DGETIEWLL+QAEPS+IAATGTG
Sbjct: 123 KVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGT 176
>AT1G72010.1 | chr1:27107844-27108971 FORWARD LENGTH=376
Length = 375
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 51/54 (94%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+PAM AARVFQLTRELGH++DGETIEWLL+QAEP+IIA+TGTG
Sbjct: 69 KVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGT 122
>AT5G23280.1 | chr5:7843017-7843769 FORWARD LENGTH=251
Length = 250
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 51/55 (92%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVT 109
KV GRGRR+R+P + AARVFQLTRELGH++DG+TIEWLLRQAEPSIIAATGTG T
Sbjct: 45 KVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTT 99
>AT1G58100.1 | chr1:21512680-21513885 REVERSE LENGTH=402
Length = 401
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 51/54 (94%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+PA+ AARVFQLTRELGH++DGETIEWLL+QAEP+I+AATGTG
Sbjct: 66 KVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGT 119
>AT5G08330.1 | chr5:2680828-2681547 FORWARD LENGTH=240
Length = 239
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 51/55 (92%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVT 109
KV GRGRR+R+P + AARVFQLTRELGH++DG+TIEWLLRQAEPSIIAATGTG T
Sbjct: 37 KVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTT 91
>AT3G27010.1 | chr3:9957810-9958754 REVERSE LENGTH=315
Length = 314
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 51/54 (94%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+PA+ AAR+FQLTRELGH++DGETI+WLL+QAEPSIIAATG+G
Sbjct: 84 KVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGT 137
>AT1G35560.1 | chr1:13116099-13117124 REVERSE LENGTH=342
Length = 341
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 50/54 (92%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+PA+ AARVFQLTREL H++DGETIEWLL+QAEP+IIAATGTG
Sbjct: 61 KVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGT 114
>AT2G45680.1 | chr2:18820717-18821787 REVERSE LENGTH=357
Length = 356
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 65/106 (61%), Gaps = 10/106 (9%)
Query: 3 YNLVPAQPLNPSAIP-NPNPDLSIAAAEPPSSDGATXXXXXXXXXXXXXXXXXKVAGRGR 61
+ + P L P A P P+ +S+A PPSS G KV GRGR
Sbjct: 37 FQVNPTVSLEPKAEPVMPSFSMSLA---PPSSTG------PPLKRASTKDRHTKVEGRGR 87
Query: 62 RVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTG 107
R+R+PA AAR+FQLTRELGH++DGETI WLL AEP+IIAATGTG
Sbjct: 88 RIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTG 133
>AT2G37000.1 | chr2:15540390-15540956 FORWARD LENGTH=189
Length = 188
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GR RRV +PA+ AAR+FQLTRELGH+T+GETIEWLL QAEPSIIAATG G
Sbjct: 49 KVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATGYGT 102
>AT5G51910.1 | chr5:21094704-21095585 REVERSE LENGTH=294
Length = 293
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 47/53 (88%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTG 107
KV GRGRR+R+PA AARVFQLTRELGH++DGETI WLL +AEP+II ATGTG
Sbjct: 63 KVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTG 115
>AT5G41030.1 | chr5:16428706-16429437 FORWARD LENGTH=244
Length = 243
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 48/54 (88%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRRVR+P + AAR++QLT+ELGH++DGET+EWLL+ AEPSI++AT G+
Sbjct: 74 KVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAEPSILSATVNGI 127
>AT3G45150.1 | chr3:16531179-16531676 FORWARD LENGTH=166
Length = 165
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVT 109
K+ GR RR+RIP VA ++F+LT+ELG +TDGET+ WLL+ AEP+I AATG GVT
Sbjct: 23 KIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAEPAIFAATGHGVT 77
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,749,935
Number of extensions: 71338
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 13
Length of query: 176
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 84
Effective length of database: 8,584,297
Effective search space: 721080948
Effective search space used: 721080948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 108 (46.2 bits)