BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0194600 Os04g0194600|AK100180
(176 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0194600 Similar to PCF1 205 1e-53
Os11g0175700 Similar to Transcription factor PCF3 (Fragment) 100 6e-22
Os02g0747400 Similar to PCF1 100 6e-22
Os02g0828566 TCP transcription factor family protein 100 7e-22
Os12g0173333 TCP transcription factor family protein 99 1e-21
Os06g0226700 Similar to PCF1 99 1e-21
Os01g0924400 Similar to Auxin-induced basic helix-loop-heli... 97 9e-21
Os02g0635800 TCP transcription factor family protein 94 4e-20
Os08g0544800 PCF2 94 6e-20
Os04g0526000 Similar to Auxin-induced basic helix-loop-heli... 94 6e-20
Os09g0521300 87 6e-18
Os01g0594401 77 7e-15
Os02g0641100 65 2e-11
>Os04g0194600 Similar to PCF1
Length = 176
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 114/176 (64%)
Query: 1 ILYNLVPAQPLNPSAIPNPNPDLSIAAAEPPSSDGATXXXXXXXXXXXXXXXXXKVAGRG 60
ILYNLVPAQPLNPSAIPNPNPDLSIAAAEPPSSDGAT KVAGRG
Sbjct: 1 ILYNLVPAQPLNPSAIPNPNPDLSIAAAEPPSSDGATPRRVRPRKSPSSSDRHSKVAGRG 60
Query: 61 RRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTXXXXXXXXXXX 120
RRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVT
Sbjct: 61 RRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAPPAAVAI 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXYYTALLMQPPNADEPPMXXXXXXXXXXXXDENNN 176
YYTALLMQPPNADEPPM DENNN
Sbjct: 121 GSSSVAAAAAAGGHGGAFVHVPYYTALLMQPPNADEPPMASAASASGTTAADENNN 176
>Os11g0175700 Similar to Transcription factor PCF3 (Fragment)
Length = 419
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 51/54 (94%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+PA+ AARVFQLTRELGH+TDGETIEWLL+QAEP+I+AATGTG
Sbjct: 129 KVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 182
>Os02g0747400 Similar to PCF1
Length = 410
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 51/54 (94%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+PA+ AARVFQLTRELGH+TDGETIEWLL+QAEP++IAATGTG
Sbjct: 79 KVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 132
>Os02g0828566 TCP transcription factor family protein
Length = 236
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 51/55 (92%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVT 109
KV GRGRR+R+P + AARVFQLTRELGH++DG+TIEWLLRQAEPSIIAATGTG T
Sbjct: 43 KVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTT 97
>Os12g0173333 TCP transcription factor family protein
Length = 418
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 51/54 (94%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+PA+ AARVFQLTRELGH++DGETIEWLL+QAEP+IIAATGTG
Sbjct: 115 KVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGT 168
>Os06g0226700 Similar to PCF1
Length = 387
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 51/54 (94%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+PA+ AARVFQLTRELGH+TDGETIEWLL+QAEP++IAATGTG
Sbjct: 65 KVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 118
>Os01g0924400 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 317
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 51/54 (94%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+PA+ AAR+FQLTRELGH++DGET++WLL+QAEP+I+AATGTG
Sbjct: 93 KVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGT 146
>Os02g0635800 TCP transcription factor family protein
Length = 211
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 50/55 (90%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVT 109
KV GRGRRVR+P + AARVFQLTRELG ++DG+TIEWLLRQAEPSI+AATGTG T
Sbjct: 60 KVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTT 114
>Os08g0544800 PCF2
Length = 373
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 49/53 (92%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTG 107
KV GRGRR+R+PA AAR+FQLTRELGH++DGETI WLL+Q+EP+IIAATGTG
Sbjct: 81 KVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTG 133
>Os04g0526000 Similar to Auxin-induced basic helix-loop-helix transcription
factor
Length = 206
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 50/55 (90%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVT 109
KV GRGRRVR+P + AARVFQLTRELG ++DG+TIEWLLRQAEPSI+AATG+G T
Sbjct: 61 KVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTT 115
>Os09g0521300
Length = 381
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 47/54 (87%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
KV GRGRR+R+P AAR+ QLTRELGH++DGETI WL++Q+EP+I+AATGTG
Sbjct: 131 KVEGRGRRIRMPVNCAARIAQLTRELGHKSDGETIRWLMQQSEPAIVAATGTGT 184
>Os01g0594401
Length = 165
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 41/44 (93%)
Query: 65 IPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGV 108
+PA+ AAR+FQLTRELGH++DGET++WLL+QAEP+I+ A GTGV
Sbjct: 1 MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVTAMGTGV 44
>Os02g0641100
Length = 171
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 37/44 (84%)
Query: 55 KVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEP 98
KV GRGRR+R+PA+ AA +FQLTREL H+++ ET++WLL+Q P
Sbjct: 45 KVDGRGRRIRMPALCAAWIFQLTRELDHKSNSETVQWLLQQVAP 88
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,956,494
Number of extensions: 148372
Number of successful extensions: 579
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 13
Length of query: 176
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 82
Effective length of database: 12,127,685
Effective search space: 994470170
Effective search space used: 994470170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)