BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0226700 Os06g0226700|AK064240
(387 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G69690.1 | chr1:26216449-26217426 FORWARD LENGTH=326 156 2e-38
AT3G47620.1 | chr3:17559004-17560473 FORWARD LENGTH=490 145 4e-35
AT1G58100.1 | chr1:21512680-21513885 REVERSE LENGTH=402 139 3e-33
AT1G72010.1 | chr1:27107844-27108971 FORWARD LENGTH=376 136 1e-32
AT3G27010.1 | chr3:9957810-9958754 REVERSE LENGTH=315 131 6e-31
AT2G45680.1 | chr2:18820717-18821787 REVERSE LENGTH=357 130 1e-30
AT1G35560.1 | chr1:13116099-13117124 REVERSE LENGTH=342 129 3e-30
AT5G23280.1 | chr5:7843017-7843769 FORWARD LENGTH=251 124 6e-29
AT5G08330.1 | chr5:2680828-2681547 FORWARD LENGTH=240 124 7e-29
AT5G51910.1 | chr5:21094704-21095585 REVERSE LENGTH=294 123 1e-28
AT2G37000.1 | chr2:15540390-15540956 FORWARD LENGTH=189 107 8e-24
AT5G41030.1 | chr5:16428706-16429437 FORWARD LENGTH=244 103 1e-22
AT3G45150.1 | chr3:16531179-16531676 FORWARD LENGTH=166 87 1e-17
>AT1G69690.1 | chr1:26216449-26217426 FORWARD LENGTH=326
Length = 325
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 87/113 (76%), Gaps = 4/113 (3%)
Query: 12 QRPNFPLQLLGKKEEQTCSTSQTXXXXXXXXXXXXXXXXXXPPKRTSTKDRHTKVDGRGR 71
RPNFPLQLL + + S+S T PPKRTSTKDRHTKV+GRGR
Sbjct: 9 HRPNFPLQLL----DSSTSSSSTSLAIISTTSEPNSEPKKPPPKRTSTKDRHTKVEGRGR 64
Query: 72 RIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFT 124
RIRMPA+CAARVFQLTRELGHK+DGETIEWLLQQAEPAVIAATGTGTIPANFT
Sbjct: 65 RIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFT 117
>AT3G47620.1 | chr3:17559004-17560473 FORWARD LENGTH=490
Length = 489
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/72 (93%), Positives = 70/72 (97%)
Query: 53 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIA 112
P KR STKDRHTKVDGRGRRIRMPA+CAARVFQLTRELGHK+DGETIEWLLQQAEP+VIA
Sbjct: 111 PLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIA 170
Query: 113 ATGTGTIPANFT 124
ATGTGTIPANFT
Sbjct: 171 ATGTGTIPANFT 182
>AT1G58100.1 | chr1:21512680-21513885 REVERSE LENGTH=402
Length = 401
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 62/69 (89%), Positives = 68/69 (98%)
Query: 56 RTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATG 115
+ STKDRHTKVDGRGRRIRMPA+CAARVFQLTRELGHK+DGETIEWLLQQAEPA++AATG
Sbjct: 57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATG 116
Query: 116 TGTIPANFT 124
TGTIPANF+
Sbjct: 117 TGTIPANFS 125
>AT1G72010.1 | chr1:27107844-27108971 FORWARD LENGTH=376
Length = 375
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/66 (92%), Positives = 66/66 (100%)
Query: 59 TKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 118
TKDRHTKVDGRGRRIRMPA+CAARVFQLTRELGHK+DGETIEWLLQQAEPA+IA+TGTGT
Sbjct: 63 TKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGT 122
Query: 119 IPANFT 124
IPANF+
Sbjct: 123 IPANFS 128
>AT3G27010.1 | chr3:9957810-9958754 REVERSE LENGTH=315
Length = 314
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 57/67 (85%), Positives = 66/67 (98%)
Query: 54 PKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAA 113
PKR+S KDRHTKV+GRGRRIRMPA+CAAR+FQLTRELGHK+DGETI+WLLQQAEP++IAA
Sbjct: 73 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAA 132
Query: 114 TGTGTIP 120
TG+GTIP
Sbjct: 133 TGSGTIP 139
>AT2G45680.1 | chr2:18820717-18821787 REVERSE LENGTH=357
Length = 356
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 64/69 (92%)
Query: 53 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIA 112
P KR STKDRHTKV+GRGRRIRMPA CAAR+FQLTRELGHK+DGETI WLL+ AEPA+IA
Sbjct: 69 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIA 128
Query: 113 ATGTGTIPA 121
ATGTGT+PA
Sbjct: 129 ATGTGTVPA 137
>AT1G35560.1 | chr1:13116099-13117124 REVERSE LENGTH=342
Length = 341
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/66 (89%), Positives = 63/66 (95%)
Query: 59 TKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 118
+KDRH KVDGRGRRIRMPAICAARVFQLTREL HK+DGETIEWLLQQAEPA+IAATGTGT
Sbjct: 55 SKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGT 114
Query: 119 IPANFT 124
IPAN +
Sbjct: 115 IPANIS 120
>AT5G23280.1 | chr5:7843017-7843769 FORWARD LENGTH=251
Length = 250
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 65/70 (92%)
Query: 55 KRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAAT 114
K+ KDRH+KVDGRGRRIRMP ICAARVFQLTRELGHK+DG+TIEWLL+QAEP++IAAT
Sbjct: 35 KKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT 94
Query: 115 GTGTIPANFT 124
GTGT PA+F+
Sbjct: 95 GTGTTPASFS 104
>AT5G08330.1 | chr5:2680828-2681547 FORWARD LENGTH=240
Length = 239
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 66/70 (94%)
Query: 55 KRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAAT 114
K+ +KDRH+KVDGRGRRIRMP ICAARVFQLTRELGHK+DG+TIEWLL+QAEP++IAAT
Sbjct: 27 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT 86
Query: 115 GTGTIPANFT 124
GTGT PA+F+
Sbjct: 87 GTGTTPASFS 96
>AT5G51910.1 | chr5:21094704-21095585 REVERSE LENGTH=294
Length = 293
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/68 (82%), Positives = 64/68 (94%)
Query: 54 PKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAA 113
PKR ++KDRHTKV+GRGRRIRMPA CAARVFQLTRELGHK+DGETI WLL++AEPA+I A
Sbjct: 52 PKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEA 111
Query: 114 TGTGTIPA 121
TGTGT+PA
Sbjct: 112 TGTGTVPA 119
>AT2G37000.1 | chr2:15540390-15540956 FORWARD LENGTH=189
Length = 188
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 55/60 (91%)
Query: 59 TKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGT 118
TKDRHTKV+GR RR+ MPA+ AAR+FQLTRELGHKT+GETIEWLL QAEP++IAATG GT
Sbjct: 43 TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATGYGT 102
>AT5G41030.1 | chr5:16428706-16429437 FORWARD LENGTH=244
Length = 243
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 56/66 (84%)
Query: 55 KRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAAT 114
K+ KDRH KV+GRGRR+R+P +CAAR++QLT+ELGHK+DGET+EWLLQ AEP++++AT
Sbjct: 64 KKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAEPSILSAT 123
Query: 115 GTGTIP 120
G P
Sbjct: 124 VNGIKP 129
>AT3G45150.1 | chr3:16531179-16531676 FORWARD LENGTH=166
Length = 165
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 48/62 (77%)
Query: 56 RTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATG 115
R + KDRH K+ GR RRIR+P A ++F+LT+ELG KTDGET+ WLLQ AEPA+ AATG
Sbjct: 14 RRTPKDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAEPAIFAATG 73
Query: 116 TG 117
G
Sbjct: 74 HG 75
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,092,397
Number of extensions: 90860
Number of successful extensions: 145
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 13
Length of query: 387
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 287
Effective length of database: 8,364,969
Effective search space: 2400746103
Effective search space used: 2400746103
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)