BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0169400 Os11g0169400|AK110948
(416 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0169400 Zinc finger, C2H2-type domain containing protein 581 e-166
Os04g0690100 Zinc finger, C2H2-type domain containing protein 286 2e-77
Os04g0115500 Zinc finger, C2H2-type domain containing protein 201 6e-52
Os01g0785900 Zinc finger, C2H2-type domain containing protein 185 6e-47
Os06g0683000 Zinc finger, C2H2-type domain containing protein 177 2e-44
Os03g0264600 Zinc finger, C2H2-type domain containing protein 131 1e-30
Os11g0496300 95 8e-20
Os02g0661600 76 6e-14
>Os11g0169400 Zinc finger, C2H2-type domain containing protein
Length = 416
Score = 581 bits (1497), Expect = e-166, Method: Compositional matrix adjust.
Identities = 296/370 (80%), Positives = 296/370 (80%)
Query: 47 TCAGSICSTKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMGPGYHGDXXXXXXXX 106
TCAGSICSTKE LMGPGYHGD
Sbjct: 47 TCAGSICSTKESSVSSRGRGRRRRSGGGGGGDGGGGGSTSSRSLMGPGYHGDSAAAVSAS 106
Query: 107 XXFNSVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGGSFRAMQIRKLSGCYLHCH 166
FNSVM IGGSFRAMQIRKLSGCYLHCH
Sbjct: 107 SSFNSVMTAATSATATTTTTTTSSSATSPPSALSSPLSSIGGSFRAMQIRKLSGCYLHCH 166
Query: 167 SVLDPRTLAAVVFSCPDCDEVFVKPDSLELHRSTRHAVSELGADDTSRNIVEIIFQSSWL 226
SVLDPRTLAAVVFSCPDCDEVFVKPDSLELHRSTRHAVSELGADDTSRNIVEIIFQSSWL
Sbjct: 167 SVLDPRTLAAVVFSCPDCDEVFVKPDSLELHRSTRHAVSELGADDTSRNIVEIIFQSSWL 226
Query: 227 KKNAPVCRIERILKVQSSDKTIKRFEQHKEAVKEKARSAGDEAGRNPRCVADGNELLRFH 286
KKNAPVCRIERILKVQSSDKTIKRFEQHKEAVKEKARSAGDEAGRNPRCVADGNELLRFH
Sbjct: 227 KKNAPVCRIERILKVQSSDKTIKRFEQHKEAVKEKARSAGDEAGRNPRCVADGNELLRFH 286
Query: 287 CTTFACSLGLAGGTALCCASSSPPPLHCKLCSIIKDGFRVDGNGRITTMATSGRAHDTAE 346
CTTFACSLGLAGGTALCCASSSPPPLHCKLCSIIKDGFRVDGNGRITTMATSGRAHDTAE
Sbjct: 287 CTTFACSLGLAGGTALCCASSSPPPLHCKLCSIIKDGFRVDGNGRITTMATSGRAHDTAE 346
Query: 347 VSPDGEKRAMLVCRVVAGRVKKLHSSNSSEDHDCDSVSPCSEGVYSDLDELFVFSPRAIL 406
VSPDGEKRAMLVCRVVAGRVKKLHSSNSSEDHDCDSVSPCSEGVYSDLDELFVFSPRAIL
Sbjct: 347 VSPDGEKRAMLVCRVVAGRVKKLHSSNSSEDHDCDSVSPCSEGVYSDLDELFVFSPRAIL 406
Query: 407 PCFVVIYSGY 416
PCFVVIYSGY
Sbjct: 407 PCFVVIYSGY 416
>Os04g0690100 Zinc finger, C2H2-type domain containing protein
Length = 498
Score = 286 bits (732), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/283 (55%), Positives = 199/283 (70%), Gaps = 28/283 (9%)
Query: 147 GGSFRAMQ---IRKLSGCYLHCHSVLDP--------RTLAAVVFSCPDCDEVFVKPDSLE 195
GGSFR MQ +R+LSGCY CH V+DP ++ A + SCPDC E+FV+PDSL
Sbjct: 226 GGSFRGMQQLSLRRLSGCY-ECHMVVDPISGVFRDSSSMRATICSCPDCGEIFVRPDSLH 284
Query: 196 LHRSTRHAVSELGADDTSRNIVEIIFQSSWLKKNAPVCRIERILKVQSSDKTIKRFEQHK 255
LH+S RHAVSELGA+DTSRNI+ IIFQSSWLKK +PVC I+RILKV ++ +T+ RF+ ++
Sbjct: 285 LHQSIRHAVSELGAEDTSRNIISIIFQSSWLKKQSPVCAIDRILKVHNAARTLARFDDYR 344
Query: 256 EAVKEKARSAGDEAGRNPRCVADGNELLRFHCTTFACSLGLAGGTALCCASSSPPPLHCK 315
AVK KA A R+PRC ADGNELLRFHC T +C LGL G T LC L C
Sbjct: 345 AAVKAKA-----MAHRHPRCTADGNELLRFHCATLSCDLGLHGATHLC------DHLSCA 393
Query: 316 LCSIIKDGFRVDGNGR-ITTMATSGRAHDTAEVS-PDGEKRAMLVCRVVAGRVKKLHSSN 373
C+II+ GFR G I TMATSGRAHD S +G++RAMLVCRV+AGRV++ ++
Sbjct: 394 ACAIIRHGFRPPAPGAGIRTMATSGRAHDAVVSSGSEGDRRAMLVCRVIAGRVRREEAAA 453
Query: 374 SSEDHDC---DSVSPCSEGVYSDLDELFVFSPRAILPCFVVIY 413
++ + + DSV+ + G+YS+LDEL VF+P AILPCFVV+Y
Sbjct: 454 AAAEEEEEEYDSVAGTTPGLYSNLDELDVFNPTAILPCFVVVY 496
>Os04g0115500 Zinc finger, C2H2-type domain containing protein
Length = 480
Score = 201 bits (512), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 126/279 (45%), Positives = 170/279 (60%), Gaps = 36/279 (12%)
Query: 155 IRKLSGCYLHCHSV---------LDPRTLAAVVFSCPDCDEVFVKPDSLELHRSTRHAVS 205
+R LSGCY C ++ PR L A C C EVF K DSLE H++ RHAVS
Sbjct: 213 LRGLSGCY-ECRAINVEPMSRRYPRPRELCA----CSQCGEVFNKADSLEHHQAIRHAVS 267
Query: 206 ELGADDTSRNIVEIIFQSSWLKKNAPVCRIERILKVQSSDKTIKRFEQHKEAVKEKARSA 265
ELG +D+ RNIVEIIF+SSW K++ P+C+I+RILKV ++ +T+ RFE +++AV+ + R+
Sbjct: 268 ELGPEDSGRNIVEIIFKSSWQKRDRPICQIDRILKVHNAARTVARFEAYRDAVRTRCRAT 327
Query: 266 GDEAGRNPRCVADGNELLRFHCTTFACSLGLAGGTALCCASSSPPPLHCKLCSIIKDGFR 325
A ADGNELLRFH AC LGL G T+LC + C +C+ I+ GF
Sbjct: 328 AARA------AADGNELLRFHPAALACPLGLNGATSLCDDDDA-----CGVCAAIRHGFA 376
Query: 326 VDGNGR---ITTMATSGRAHDTAEVSPDGEK----RAMLVCRVVAGRVKKLHSSNSSEDH 378
+ T A+SGRAHD + ++ RAMLVCRV+AGRV++ +E+
Sbjct: 377 PWAGAHPLGVRTTASSGRAHDCGAAAAAAQQAGGCRAMLVCRVIAGRVRRNDDDGGAEEE 436
Query: 379 D--CDSVS--PCSEGVYSDLDELFVFSPRAILPCFVVIY 413
+ DSV+ + VY +L+ELFV +PRAILPCFVVIY
Sbjct: 437 EGAFDSVAGDEAASSVYGNLEELFVANPRAILPCFVVIY 475
>Os01g0785900 Zinc finger, C2H2-type domain containing protein
Length = 485
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 152/253 (60%), Gaps = 32/253 (12%)
Query: 179 FSCPDCDEVFVKPDSLELHRSTRHAVSELGADDTSRNIVEIIFQSSWLKKNAPVCRIERI 238
SC C E F K ++LE H ++HAV+EL D+SR IVEII ++S LK + RIER+
Sbjct: 243 LSCHRCGEQFSKWEALEAHHLSKHAVTELVEGDSSRKIVEIICRTSLLKSESSCVRIERV 302
Query: 239 LKVQSSDKTIKRFEQHKEAVKEKARSAGDEAGRNPRCVADGNELLRFHCTTFACSLGLAG 298
KV ++ +T+ RFE+++EAVK KA ++PRC+ADGNELLRFH T +C+LG A
Sbjct: 303 FKVHNTQRTLARFEEYREAVKLKASKLPK---KHPRCLADGNELLRFHGATLSCALGGAA 359
Query: 299 GTALCCASSSPPPLHCKLCSIIKDGFRVDGNGR----ITTMATSGRAHDTAEVS------ 348
G++ CAS C +C II+ GF G+ + T +TSGRA+++ E S
Sbjct: 360 GSSSLCASDK-----CAVCRIIRHGFSAKKEGKAGVGVFTTSTSGRAYESIEASAGAVVG 414
Query: 349 ---PDGEKRAMLVCRVVAGRVKKL------HSSNSSEDHDCDSVSPCSEGVYSDLDELFV 399
P ++A+LVCRV+AGRV K + + D V P YS+++EL++
Sbjct: 415 GDDPAATRKALLVCRVIAGRVHKPLENLKEFAGQTGFDSLAGKVGP-----YSNIEELYL 469
Query: 400 FSPRAILPCFVVI 412
+PRA+LPCFVVI
Sbjct: 470 LNPRALLPCFVVI 482
>Os06g0683000 Zinc finger, C2H2-type domain containing protein
Length = 465
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 150/250 (60%), Gaps = 25/250 (10%)
Query: 177 VVFSCPDCDEVFVKPDSLELHRSTRHAVSELGADDTSRNIVEIIFQSSWLKKNAPVCRIE 236
V C C + F D+LE H +RHAV+EL D+SR +VEII ++ W K + RIE
Sbjct: 224 VGIRCHRCGDRFANHDALESHHHSRHAVTELVEGDSSRKVVEIICKAGWAKTENALGRIE 283
Query: 237 RILKVQSSDKTIKRFEQHKEAVKEKARSAGDEAGRNPRCVADGNELLRFHCTTFACSLGL 296
R++KV ++++++ RFE+ +EAVK K A + ++PRC+ADGNELLRFH TT ACSLG
Sbjct: 284 RVVKVHNAERSVARFEEFREAVKGK---AARLSKKHPRCLADGNELLRFHATTLACSLGA 340
Query: 297 AGGTALCCASSSPPPLHCKLCSIIKDGFRV-----DGNGRITTMATSGRA-------HDT 344
+ LC + S C +C II+ GF DG G TT +TS RA D
Sbjct: 341 GDSSTLCTSGS------CSVCRIIRHGFSATREIKDGVGVFTT-STSKRALECIAGDGDG 393
Query: 345 AEVSPDGEKRAMLVCRVVAGRVKK--LHSSNSSEDHDCDSVSPCSEGVYSDLDELFVFSP 402
E + G ++A+LVCRVVAGR+ + + + DSV+ G Y+ ++EL++ +P
Sbjct: 394 DEAANAGVRKALLVCRVVAGRIHRPLENLQEVAAQPGFDSVAG-KVGAYASIEELYLLNP 452
Query: 403 RAILPCFVVI 412
RA+LPCFVVI
Sbjct: 453 RALLPCFVVI 462
>Os03g0264600 Zinc finger, C2H2-type domain containing protein
Length = 454
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 141/259 (54%), Gaps = 35/259 (13%)
Query: 178 VFSCPDCDEVFVKPDSLELHRSTRHAVSELGADDTSRNIVEIIFQSSWLKKNAPVC---- 233
VF C C EV KP LELH++ +H++SEL + D+S NI+ +IF + W P
Sbjct: 208 VFPCKVCGEVLSKPQQLELHQAMKHSLSELSSLDSSMNIIRMIFLAGWKPAVMPGAGEPP 267
Query: 234 RIERILKVQSSDKTIKRFEQHKEAVKEKARSAGDEAGR---NPRCVADGNELLRFHCTTF 290
+ RIL++ + + + RFE++++ V+ +A AG RCVADGNE LRF+C+T
Sbjct: 268 SVRRILRIHHNPRVLTRFEEYRDLVRARAARRCAGAGAAAVEERCVADGNERLRFYCSTM 327
Query: 291 ACSLGLAG--GTALCCASSSPPPLHCKLCSIIKDGF---RVDGNGRITTMATSGRAHDTA 345
C+LG AG G+ CC CSI++ GF + D +G I T ++ AH +
Sbjct: 328 LCTLG-AGVCGSPYCCT-----------CSILRHGFAGKQADVDG-IATYSSGRAAHASL 374
Query: 346 EVSPDGE------KRAMLVCRVVAGRVKKLHSSNSSEDHDCDSVSPCSEGVYS----DLD 395
+ E +RAMLVCRVVAGRV + + + + P S + D
Sbjct: 375 PDDVEREFAFLQVRRAMLVCRVVAGRVGRGAADDKVAYDSMVPLLPTSSFAAATRGDDDV 434
Query: 396 ELFVFSPRAILPCFVVIYS 414
EL VF+PRA+LPCFV+IYS
Sbjct: 435 ELLVFNPRAVLPCFVIIYS 453
>Os11g0496300
Length = 221
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 52/84 (61%), Gaps = 26/84 (30%)
Query: 150 FRAMQIRKLSGCYLHCHSVLDPRTL---AAVVFSCPDCDEVFVKPDSLELHRSTRHAVSE 206
FRAMQIR LS YLHCHSVLDPRTL AA VFSC DCDE
Sbjct: 130 FRAMQIRNLSDFYLHCHSVLDPRTLAAAAATVFSCSDCDE-------------------- 169
Query: 207 LGADDTSRNIVEIIFQSSWLKKNA 230
DDTS NIVEIIFQSSWLKKNA
Sbjct: 170 ---DDTSMNIVEIIFQSSWLKKNA 190
>Os02g0661600
Length = 294
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 100/229 (43%), Gaps = 56/229 (24%)
Query: 204 VSELGADDTSRNIVEIIFQSSWLKKNAPVC-----------------RIERILKVQSSDK 246
++EL A +SR +VEIIF SSW A +E + +V + +
Sbjct: 101 LTELPAGHSSRQVVEIIFLSSWSPLPATQAALPAAVASTAAAGASTAEVEMLFRVHNPAR 160
Query: 247 TIKRFEQHKEAVKEKARSAGDEAGRNPRCVADGNELLRFHCTTFACSLGLAGGTALCCAS 306
+ RFE ++ AV+ +A A R ADGNE++RF S
Sbjct: 161 AVARFEDYRAAVRARAGGAS-------RSAADGNEMMRF--------------------S 193
Query: 307 SSPPPLHCKLCSIIKDGFRVDGNGRITTMATSGRAHDTAEVSPDGEKRAMLVCRVVAGRV 366
+PP C + +D R I T SG AH P +RAM +CRV+AGRV
Sbjct: 194 PAPPDDGCS-SAAGEDALR------IRTFDGSGGAHANGR-GPASGRRAMFLCRVIAGRV 245
Query: 367 KKLHSSNSSEDHDCDSVSPCSE--GVYSDLDELFVFSPRAILPCFVVIY 413
+ S D + V P E V + EL VF RA+LPCF++IY
Sbjct: 246 AD-GPATSGAGADAEPV-PSKEYDSVRAGKGELVVFDRRAVLPCFLIIY 292
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,439,152
Number of extensions: 458751
Number of successful extensions: 1284
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1255
Number of HSP's successfully gapped: 8
Length of query: 416
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 313
Effective length of database: 11,657,759
Effective search space: 3648878567
Effective search space used: 3648878567
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)