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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0785900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0308) R2 : 0.00842
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.128 (0.0648) R2dN8 : 0.0109 R2N8 : 0.00842
σ : 0.58
deviance : 154.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.03 0.56 3.29 0.24 0.222 7.05 0.326 14.6 0.148 4.96 1016 1637 -- --
150.24 0.575 3.23 0.142 0.176 -0.0546 0.831 -- 0.143 6.9 1013 1852 -- --
141.99 0.555 3.3 0.263 0.233 7.59 -- 15.6 0.15 4.07 1016 1651 -- --
149.42 0.569 3.22 0.176 0.224 0.305 -- -- 0.173 4.51 1014 3943 -- --
144.63 0.56 3.3 0.286 -- 7.93 -- 16.4 0.153 -- 1016 1675 -- --
150.25 0.575 3.23 0.142 0.176 -- 0.835 -- 0.144 6.92 -- -- -- --
151.02 0.575 3.23 0.152 0.225 -- -- -- 0.14 4.59 -- -- -- --
152.38 0.575 3.23 0.183 -- 0.28 -- -- 0.17 -- 1014 3928 -- --
150.18 0.571 3.23 -- 0.232 0.296 -- -- 0.149 4.55 1014 3920 -- --
153.71 0.579 3.24 0.161 -- -- -- -- 0.145 -- -- -- -- --
151.63 0.576 3.24 -- 0.228 -- -- -- 0.123 4.58 -- -- -- --
153.21 0.576 3.23 -- -- 0.268 -- -- 0.151 -- 1014 3909 -- --
154.39 0.58 3.24 -- -- -- -- -- 0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 140.67 humidity 50 10 < th dose independent rect. 11 1
93 140.67 humidity 50 10 < th dose dependent rect. 11 1
185 141.68 atmosphere 1015 1440 < th dose independent rect. 11 3
186 141.69 atmosphere 1015 1440 > th dose independent rect. 11 3
193 141.81 atmosphere 1000 90 < th dose independent rect. 23 11
194 141.84 atmosphere 1015 1440 < th dose independent rect. 6 8
195 141.84 atmosphere 1015 1440 > th dose dependent rect. 11 3
204 141.86 atmosphere 1015 1440 < th dose independent rect. 9 5
226 141.90 atmosphere 1000 720 < th dose dependent rect. 22 1
272 141.95 atmosphere 1015 1440 > th dose independent rect. 24 19
276 141.96 atmosphere 1015 1440 < th dose independent rect. 11 8
278 141.96 atmosphere 1015 1440 < th dose independent rect. 2 12
279 141.96 atmosphere 1015 1440 < th dose independent rect. 24 14
280 141.96 atmosphere 1015 1440 > th dose independent rect. 24 15
287 141.97 atmosphere 1015 1440 > th dose independent sin 0 NA
314 141.98 atmosphere 1015 1440 < th dose independent rect. 6 13
316 141.98 atmosphere 1015 1440 > th dose dependent rect. 12 1
329 141.99 atmosphere 1015 1440 < th dose independent rect. 9 10
364 142.02 atmosphere 1015 1440 < th dose independent rect. 2 17
370 142.03 atmosphere 1015 1440 < th dose independent rect. 24 16
371 142.03 atmosphere 1015 1440 < th dose independent rect. 24 19
372 142.04 atmosphere 1015 1440 < th dose independent sin 2 NA
445 142.34 atmosphere 1010 720 > th dose dependent rect. 1 1
465 142.50 atmosphere 1015 1440 > th dose dependent sin 23 NA
467 142.51 atmosphere 1000 10 < th dose independent rect. 22 13
469 142.52 atmosphere 1000 720 < th dose independent rect. 22 1
486 142.58 atmosphere 1015 1440 > th dose dependent rect. 24 21
488 142.60 atmosphere 1015 1440 > th dose dependent rect. 24 19
511 142.61 atmosphere 1015 1440 > th dose dependent rect. 24 15
578 142.67 atmosphere 1000 90 < th dose dependent rect. 23 11
580 142.70 atmosphere 1000 90 < th dose independent rect. 19 15
609 142.81 atmosphere 1000 10 < th dose independent rect. 18 17
617 142.87 atmosphere 1000 270 < th dose independent rect. 23 9
631 142.90 atmosphere 1000 10 < th dose independent rect. 16 19
719 143.50 wind 1 30 < th dose dependent rect. 3 1
735 143.59 wind 1 30 < th dose independent rect. 3 1
758 143.66 atmosphere 1000 10 < th dose independent rect. 2 9
780 143.76 atmosphere 1000 270 > th dose independent sin 10 NA
781 143.76 atmosphere 1000 90 < th dose independent rect. 7 3
786 143.79 atmosphere 1000 10 < th dose independent rect. 6 5
788 143.80 atmosphere 1000 270 < th dose independent rect. 6 1
801 143.81 atmosphere 1000 10 < th dose dependent rect. 20 15
824 143.89 atmosphere 1000 90 < th dose independent rect. 8 1
868 143.96 atmosphere 1000 30 > th dose independent sin 7 NA
930 144.18 atmosphere 1000 90 < th dose dependent rect. 7 3
940 144.22 atmosphere 1000 90 < th dose dependent rect. 9 1
952 144.25 atmosphere 1000 30 < th dose dependent rect. 6 5
960 144.28 atmosphere 1000 270 < th dose dependent rect. 6 1
979 144.33 atmosphere 1000 10 < th dose dependent rect. 16 19
986 144.36 atmosphere 1000 30 < th dose dependent rect. 3 8
997 144.39 atmosphere 1000 270 < th dose independent sin 9 NA