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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0115500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0301) R2 : 0.0203
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.195 (0.0635) R2dN8 : 0.0262 R2N8 : 0.0203
σ : 0.568
deviance : 147.89
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
132.02 0.54 3.01 0.0158 0.253 0.189 -1.17 -2.02 0.291 21.3 23.91 759 -- --
134.96 0.541 3.05 -0.244 0.259 0.937 -0.78 -- 0.21 21 19.23 499 -- --
135.53 0.542 3.02 -0.0684 0.254 0.263 -- -1.48 0.259 22.4 22.4 1052 -- --
136.25 0.544 3.05 -0.19 0.243 1.02 -- -- 0.225 22.6 19.03 1227 -- --
138.72 0.549 3.02 -0.142 -- 0.433 -- -1.64 0.234 -- 19.37 1544 -- --
139.53 0.554 3.06 -0.399 0.224 -- -0.691 -- 0.154 21.2 -- -- -- --
141.08 0.556 3.06 -0.376 0.228 -- -- -- 0.153 22.1 -- -- -- --
137.17 0.545 3.05 -0.236 -- 1.77 -- -- 0.191 -- 14.83 1350 -- --
137.03 0.545 3.04 -- 0.214 1.25 -- -- 0.248 22.4 18.71 1546 -- --
144.21 0.561 3.06 -0.373 -- -- -- -- 0.153 -- -- -- -- --
144.81 0.563 3.05 -- 0.226 -- -- -- 0.195 22 -- -- -- --
138.5 0.548 3.05 -- -- 1.93 -- -- 0.217 -- 14.91 1355 -- --
147.89 0.568 3.05 -- -- -- -- -- 0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.19 temperature 25.0 30 > th dose dependent rect. 22 6
2 123.22 temperature 25.0 30 > th dose dependent rect. 22 4
5 123.40 temperature 25.0 10 > th dose independent rect. 22 6
6 123.42 temperature 25.0 10 > th dose independent rect. 22 4
44 125.50 temperature 25.0 270 > th dose dependent rect. 21 1
59 127.11 temperature 15.0 10 > th dose independent rect. 23 23
62 127.28 temperature 25.0 270 > th dose independent rect. 21 1
68 127.66 temperature 15.0 30 > th dose independent rect. 1 23
69 128.38 temperature 15.0 1440 > th dose independent rect. 23 1
76 128.83 temperature 30.0 720 > th dose independent rect. 13 1
82 129.24 temperature 20.0 720 > th dose dependent rect. 1 4
83 129.37 temperature 25.0 30 > th dose independent rect. 18 10
85 129.41 temperature 25.0 30 > th dose independent rect. 18 8
89 129.48 temperature 15.0 30 > th dose independent rect. 23 12
95 129.62 atmosphere 1010.0 90 < th dose dependent rect. 12 15
104 129.79 temperature 20.0 720 > th dose dependent rect. 1 1
110 129.88 temperature 25.0 30 > th dose independent rect. 16 12
111 129.92 temperature 25.0 30 > th dose independent rect. 16 10
114 129.95 temperature 15.0 720 > th dose independent rect. 7 16
118 130.05 temperature 15.0 720 > th dose independent rect. 11 8
138 130.36 temperature 15.0 90 > th dose independent rect. 12 15
144 130.55 temperature 20.0 720 > th dose independent rect. 12 1
157 130.72 temperature 30.0 10 < th dose dependent rect. 22 1
162 130.75 temperature 10.0 30 > th dose dependent rect. 1 23
163 130.76 atmosphere 1005.0 30 > th dose independent rect. 15 10
168 130.78 radiation 30.0 4320 < th dose independent rect. 23 8
171 130.84 temperature 10.0 30 > th dose dependent rect. 23 23
186 130.98 temperature 15.0 30 > th dose independent rect. 23 10
199 131.09 temperature 15.0 30 > th dose independent rect. 12 12
200 131.09 temperature 15.0 10 > th dose independent rect. 12 23
204 131.13 temperature 15.0 1440 > th dose independent rect. 6 6
206 131.16 temperature 25.0 720 < th dose dependent rect. 3 2
207 131.17 atmosphere 1005.0 10 > th dose independent rect. 22 1
209 131.21 atmosphere 1005.0 30 > th dose independent rect. 18 7
212 131.23 wind 3.0 30 > th dose independent rect. 22 1
213 131.23 humidity 90.0 10 < th dose dependent rect. 22 1
216 131.28 temperature 15.0 720 > th dose independent rect. 12 6
217 131.28 wind 7.0 4320 > th dose dependent rect. 15 1
222 131.36 temperature 30.0 720 < th dose dependent rect. 24 6
224 131.37 wind 5.0 10 < th dose independent rect. 22 1
228 131.39 temperature 15.0 720 > th dose independent rect. 12 12
229 131.39 wind 7.0 10 < th dose dependent rect. 22 1
234 131.40 atmosphere 1000.0 30 > th dose dependent rect. 18 12
235 131.41 temperature 15.0 720 > th dose independent rect. 19 5
238 131.43 temperature 15.0 1440 > th dose independent rect. 13 10
252 131.47 atmosphere 1015.0 10 < th dose dependent rect. 22 1
261 131.54 atmosphere 1000.0 10 > th dose independent rect. 23 23
264 131.55 temperature 10.0 10 > th dose independent rect. 22 1
266 131.55 temperature 30.0 10 < th dose independent rect. 22 1
267 131.55 humidity 50.0 10 > th dose independent rect. 22 1
270 131.55 atmosphere 995.0 10 > th dose independent rect. 22 1
271 131.55 atmosphere 1010.0 10 < th dose independent rect. 22 1
273 131.55 radiation 1.0 10 < th dose independent rect. 22 1
278 131.55 precipitation 0.1 10 < th dose independent rect. 22 1
280 131.55 radiation 1.0 10 < th dose dependent rect. 22 1
285 131.55 precipitation 0.1 10 < th dose dependent rect. 22 1
292 131.59 humidity 90.0 14400 < th dose independent rect. 6 1
297 131.61 atmosphere 1010.0 30 < th dose dependent sin 14 NA
300 131.63 radiation 30.0 4320 < th dose independent rect. 19 12
308 131.65 temperature 10.0 720 > th dose dependent rect. 23 8
310 131.66 atmosphere 995.0 10 > th dose dependent rect. 22 1
314 131.68 temperature 20.0 720 > th dose independent rect. 1 4
318 131.70 temperature 20.0 720 > th dose independent rect. 12 19
323 131.71 humidity 50.0 10 > th dose dependent rect. 22 1
331 131.75 humidity 80.0 10 < th dose independent rect. 1 5
337 131.76 wind 7.0 4320 > th dose independent rect. 14 2
341 131.76 humidity 80.0 10 < th dose dependent rect. 1 5
345 131.76 temperature 25.0 720 < th dose dependent rect. 24 21
346 131.77 humidity 80.0 10 < th dose independent rect. 3 3
355 131.77 temperature 20.0 720 > th dose independent rect. 1 6
356 131.77 radiation 30.0 4320 < th dose independent rect. 17 14
359 131.77 humidity 80.0 10 < th dose dependent rect. 3 3
371 131.78 wind 9.0 14400 < th dose independent rect. 23 1
375 131.78 atmosphere 1000.0 30 > th dose dependent rect. 16 14
377 131.79 humidity 80.0 10 < th dose independent rect. 5 1
387 131.79 radiation 30.0 4320 < th dose independent rect. 3 4
388 131.79 temperature 20.0 720 < th dose independent rect. 24 19
389 131.79 humidity 80.0 10 < th dose dependent rect. 5 1
399 131.80 temperature 20.0 720 < th dose independent rect. 1 5
401 131.80 radiation 10.0 14400 < th dose dependent rect. 1 1
403 131.81 temperature 15.0 720 > th dose independent rect. 6 18
419 131.85 humidity 90.0 10 < th dose independent rect. 22 1
428 131.86 atmosphere 1005.0 30 > th dose independent rect. 18 12
442 131.89 atmosphere 1005.0 30 > th dose dependent rect. 24 1
450 131.91 wind 7.0 4320 < th dose independent rect. 14 2
459 131.93 temperature 25.0 90 > th dose independent rect. 24 1
493 131.98 temperature 10.0 10 > th dose dependent rect. 22 1
501 131.99 temperature 20.0 720 < th dose independent rect. 3 3
508 132.00 temperature 10.0 1440 > th dose independent rect. 1 1
511 132.00 temperature 30.0 1440 < th dose independent rect. 1 1
515 132.00 humidity 50.0 1440 > th dose independent rect. 1 1
525 132.00 atmosphere 995.0 1440 > th dose independent rect. 1 1
526 132.00 radiation 1.0 1440 < th dose independent rect. 1 1
549 132.00 temperature 10.0 1440 > th dose independent rect. 2 23
562 132.01 radiation 20.0 4320 > th dose dependent rect. 6 1
583 132.02 atmosphere 1005.0 30 > th dose independent rect. 16 14
590 132.02 atmosphere 1015.0 30 < th dose dependent rect. 12 23
622 132.05 atmosphere 1000.0 30 > th dose dependent rect. 15 10
636 132.07 temperature 10.0 720 > th dose dependent rect. 23 1
645 132.09 temperature 20.0 720 > th dose independent rect. 23 8
649 132.10 temperature 20.0 720 > th dose independent rect. 23 19
656 132.11 temperature 15.0 720 > th dose independent rect. 19 16
661 132.11 temperature 15.0 90 > th dose dependent rect. 1 20
667 132.13 humidity 90.0 14400 > th dose independent rect. 6 1
683 132.15 radiation 1.0 14400 < th dose dependent rect. 23 1
700 132.18 atmosphere 1005.0 30 > th dose independent rect. 24 1
701 132.18 humidity 60.0 30 > th dose independent rect. 23 12
702 132.18 temperature 20.0 720 > th dose independent rect. 1 17
704 132.18 wind 1.0 30 > th dose dependent rect. 22 1
731 132.23 atmosphere 1010.0 30 < th dose dependent rect. 12 19
732 132.24 temperature 15.0 270 > th dose independent rect. 19 23
735 132.24 temperature 15.0 90 > th dose dependent rect. 1 15
736 132.24 temperature 25.0 720 < th dose dependent rect. 10 21
741 132.26 wind 3.0 30 < th dose independent rect. 24 1
752 132.27 temperature 20.0 720 < th dose dependent rect. 11 19
759 132.29 humidity 90.0 14400 < th dose independent rect. 4 5
769 132.30 temperature 15.0 30 > th dose dependent rect. 1 17
783 132.31 temperature 20.0 270 > th dose dependent rect. 1 13
795 132.33 atmosphere 1015.0 30 < th dose independent rect. 24 1
797 132.33 atmosphere 1005.0 90 < th dose independent rect. 13 13
804 132.34 temperature 15.0 30 > th dose independent rect. 23 19
807 132.34 temperature 25.0 720 < th dose dependent rect. 18 21
810 132.35 temperature 15.0 720 > th dose independent rect. 15 9
811 132.35 temperature 15.0 1440 > th dose independent rect. 6 13
815 132.35 temperature 15.0 4320 < th dose dependent rect. 23 7
832 132.38 wind 9.0 1440 < th dose independent rect. 23 1
836 132.38 temperature 30.0 1440 < th dose independent rect. 23 1
840 132.38 humidity 50.0 1440 > th dose independent rect. 23 1
850 132.38 atmosphere 995.0 1440 > th dose independent rect. 23 1
851 132.38 radiation 1.0 1440 < th dose independent rect. 23 1
873 132.38 radiation 40.0 30 < th dose independent rect. 23 12
876 132.38 temperature 10.0 1440 > th dose independent rect. 24 23
879 132.38 atmosphere 1000.0 30 > th dose independent rect. 1 23
881 132.38 radiation 1.0 1440 < th dose dependent rect. 23 1
895 132.39 wind 1.0 30 > th dose independent rect. 24 1
904 132.39 radiation 40.0 43200 < th dose dependent rect. 23 1
907 132.39 temperature 10.0 30 > th dose dependent rect. 12 23
911 132.40 temperature 15.0 30 > th dose independent rect. 23 6
938 132.42 temperature 25.0 720 < th dose dependent rect. 12 23
941 132.43 wind 1.0 30 > th dose dependent rect. 24 1
944 132.43 humidity 80.0 14400 > th dose dependent rect. 3 8
947 132.44 humidity 90.0 720 < th dose independent rect. 12 1
958 132.45 radiation 20.0 4320 > th dose independent rect. 6 1
976 132.45 precipitation 0.1 10 < th dose independent rect. 23 23
981 132.45 temperature 25.0 720 < th dose dependent rect. 15 16
983 132.45 precipitation 0.1 10 < th dose dependent rect. 23 23
988 132.46 humidity 80.0 30 > th dose dependent rect. 24 1
990 132.46 temperature 30.0 270 < th dose dependent rect. 2 9
993 132.46 temperature 25.0 720 < th dose dependent rect. 17 14