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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0690100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.82 (0.0482) R2 : 0.265
β1 : -1.4 (0.176) R2dD : 0.108 R2D : 0.045
β2 : 0.0396 (0.123) R2dC : -9.73e-05 R2C : -0.00769
β3 : 1.27 (0.149) R2dE : 0.125 R2E : 0.114
β4 : 2.86 (0.538) R2dD*C : 0.0467 R2D*C : 0.0376
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.276 (0.105) R2dN8 : 0.02 R2N8 : 0.02
σ : 0.894
deviance : 368.17
__
_____
C
peak time of C : 7.57
E
wheather : humidity
threshold : 71.02
memory length : 709
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.1
open length of G : 5.23

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
360.62 0.892 3.81 -1.61 0.00895 1.45 2.77 -2.93 -0.26 6.81 71.01 735 16.9 3.34
368.17 0.894 3.82 -1.4 0.0396 1.27 2.86 -- -0.276 7.57 71.02 709 17.1 5.23
379.53 0.907 3.82 -1.66 0.0594 1.53 -- -3.61 -0.286 7.68 71 747 16.8 4.21
389.68 0.919 3.8 -1.31 0.0294 1.3 -- -- -0.299 20.1 71.44 695 17.7 4.78
379.62 0.907 3.82 -1.62 -- 1.51 -- -3.36 -0.287 -- 71 748 16.9 4.42
424.79 0.966 3.84 -1.27 0.0361 -- 3.2 -- -0.497 7.11 -- -- -- --
445.26 0.988 3.85 -1.22 0.329 -- -- -- -0.511 1.83 -- -- -- --
389.22 0.919 3.8 -1.34 -- 1.32 -- -- -0.316 -- 72 669 18.2 4.84
433.44 0.97 3.79 -- 0.0621 1.31 -- -- -0.236 17.4 73 677 18 4.83
451.81 0.993 3.84 -1.21 -- -- -- -- -0.504 -- -- -- -- --
484.41 1.03 3.81 -- 0.307 -- -- -- -0.375 1.72 -- -- -- --
433.36 0.97 3.77 -- -- 1.25 -- -- -0.166 -- 72.25 681 18 4.95
490.13 1.03 3.81 -- -- -- -- -- -0.37 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 365.14 humidity 70.0 720 < th dose independent rect. 17 3
13 366.94 humidity 80.0 720 < th dose dependent rect. 17 13
20 368.50 humidity 80.0 720 < th dose dependent rect. 18 2
58 370.61 radiation 30.0 14400 > th dose dependent rect. 7 1
87 374.15 humidity 70.0 720 > th dose independent rect. 16 16
126 376.84 humidity 70.0 720 < th dose independent sin 12 NA
153 379.08 atmosphere 995.0 4320 > th dose independent rect. 5 1
156 379.29 humidity 80.0 720 < th dose dependent sin 12 NA
177 380.65 humidity 70.0 720 > th dose independent sin 12 NA
228 382.08 radiation 10.0 1440 > th dose dependent rect. 10 1
229 382.12 precipitation 0.1 43200 < th dose independent rect. 22 2
230 382.12 precipitation 0.1 43200 < th dose dependent rect. 22 2
232 382.19 precipitation 0.1 43200 > th dose independent rect. 22 2
233 382.19 precipitation 0.1 43200 > th dose dependent rect. 22 2
236 382.36 radiation 20.0 1440 > th dose independent rect. 10 2
242 383.10 temperature 25.0 720 > th dose dependent rect. 18 1
256 383.24 humidity 70.0 720 > th dose independent rect. 18 8
275 383.55 radiation 40.0 1440 < th dose dependent rect. 10 2
334 384.68 radiation 40.0 1440 > th dose dependent rect. 10 1
348 385.48 radiation 1.0 4320 > th dose independent rect. 8 1
352 385.61 radiation 1.0 720 > th dose dependent rect. 17 12
357 385.80 radiation 1.0 720 > th dose dependent rect. 17 2
371 386.02 radiation 30.0 1440 < th dose independent rect. 10 1
376 386.11 temperature 15.0 30 > th dose independent rect. 5 23
389 386.54 humidity 90.0 720 < th dose dependent rect. 17 21
417 386.85 temperature 30.0 720 > th dose independent rect. 18 1
434 387.03 temperature 20.0 90 > th dose dependent rect. 4 1
435 387.04 radiation 30.0 14400 < th dose independent rect. 6 2
452 387.46 radiation 30.0 14400 < th dose independent rect. 2 6
455 387.50 humidity 50.0 720 > th dose dependent rect. 16 16
459 387.53 radiation 10.0 1440 < th dose dependent rect. 16 22
466 387.64 radiation 40.0 14400 > th dose dependent rect. 14 1
467 387.66 radiation 40.0 720 < th dose independent rect. 14 18
485 387.97 radiation 30.0 1440 < th dose dependent rect. 16 20
487 387.98 radiation 30.0 14400 < th dose independent rect. 23 9
507 388.04 radiation 30.0 14400 < th dose independent rect. 17 15
552 388.49 radiation 1.0 1440 > th dose dependent rect. 16 22
574 388.62 radiation 1.0 1440 > th dose dependent rect. 10 22
578 388.68 atmosphere 1000.0 30 > th dose dependent rect. 4 1
600 388.80 radiation 10.0 1440 < th dose independent rect. 16 1
604 388.84 radiation 40.0 1440 < th dose independent rect. 10 5
607 388.89 radiation 20.0 1440 > th dose dependent rect. 10 22
612 388.92 wind 9.0 30 < th dose independent rect. 5 23
624 389.00 radiation 30.0 1440 > th dose dependent rect. 10 7
644 389.04 radiation 40.0 1440 < th dose independent rect. 10 10
653 389.09 radiation 10.0 1440 < th dose independent rect. 15 16
654 389.09 radiation 40.0 1440 < th dose independent rect. 10 22
659 389.12 humidity 70.0 1440 < th dose independent rect. 11 1
660 389.12 radiation 40.0 1440 < th dose independent rect. 10 14
661 389.12 radiation 10.0 1440 < th dose dependent rect. 6 12
667 389.16 radiation 40.0 1440 < th dose independent rect. 10 18
675 389.19 radiation 10.0 1440 < th dose dependent rect. 2 16
686 389.25 radiation 1.0 4320 < th dose independent rect. 8 1
687 389.25 radiation 1.0 4320 < th dose dependent rect. 8 1
690 389.26 temperature 20.0 90 > th dose independent rect. 4 1
700 389.29 radiation 10.0 1440 < th dose dependent rect. 23 19
703 389.30 radiation 10.0 1440 < th dose dependent rect. 6 18
704 389.31 wind 3.0 30 < th dose independent rect. 4 1
705 389.31 radiation 30.0 14400 > th dose independent rect. 16 16
727 389.32 precipitation 0.1 30 < th dose independent rect. 4 1
728 389.32 humidity 70.0 1440 < th dose independent rect. 16 21
729 389.32 precipitation 0.1 30 < th dose dependent rect. 4 1
740 389.34 radiation 10.0 1440 < th dose dependent rect. 6 22
741 389.34 radiation 10.0 1440 < th dose dependent rect. 19 23
748 389.36 radiation 10.0 1440 < th dose dependent rect. 2 22
769 389.42 atmosphere 1005.0 30 > th dose independent rect. 4 1
785 389.44 radiation 40.0 1440 < th dose independent rect. 14 6
802 389.48 temperature 10.0 30 > th dose independent rect. 4 1
804 389.48 temperature 30.0 30 < th dose independent rect. 4 1
805 389.48 humidity 50.0 30 > th dose independent rect. 4 1
808 389.48 atmosphere 995.0 30 > th dose independent rect. 4 1
809 389.48 atmosphere 1010.0 30 < th dose independent rect. 4 1
811 389.48 radiation 1.0 30 < th dose independent rect. 4 1
817 389.48 radiation 10.0 1440 < th dose dependent no NA NA
818 389.48 radiation 10.0 1440 < th dose dependent rect. 11 23
820 389.49 radiation 40.0 30 < th dose dependent rect. 4 1
840 389.55 radiation 10.0 1440 < th dose independent rect. 16 4
848 389.56 radiation 1.0 1440 > th dose dependent rect. 13 23
872 389.62 radiation 10.0 1440 < th dose dependent rect. 8 23
875 389.63 radiation 20.0 1440 < th dose independent rect. 16 20
906 389.73 radiation 40.0 1440 < th dose independent rect. 14 10
908 389.75 radiation 10.0 1440 < th dose independent rect. 16 8
933 389.84 radiation 40.0 1440 < th dose dependent rect. 10 22
936 389.85 radiation 1.0 1440 > th dose dependent rect. 5 9
974 389.91 radiation 30.0 14400 > th dose independent rect. 7 1
986 389.91 radiation 10.0 1440 < th dose independent rect. 16 12