BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0690100 Os04g0690100|AK099856
(498 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0690100 Zinc finger, C2H2-type domain containing protein 803 0.0
Os11g0169400 Zinc finger, C2H2-type domain containing protein 281 9e-76
Os04g0115500 Zinc finger, C2H2-type domain containing protein 254 1e-67
Os01g0785900 Zinc finger, C2H2-type domain containing protein 203 2e-52
Os06g0683000 Zinc finger, C2H2-type domain containing protein 199 4e-51
Os03g0264600 Zinc finger, C2H2-type domain containing protein 136 4e-32
>Os04g0690100 Zinc finger, C2H2-type domain containing protein
Length = 498
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/498 (81%), Positives = 407/498 (81%)
Query: 1 IRKQQAKKQHHSLHELAKRIAMVEPGRARETKVTXXXXXXXXXXXXVMXXXXXXXXXLVV 60
IRKQQAKKQHHSLHELAKRIAMVEPGRARETKVT VM LVV
Sbjct: 1 IRKQQAKKQHHSLHELAKRIAMVEPGRARETKVTASASSSAGSDAAVMKKKKKKKKKLVV 60
Query: 61 ASRKVDEKDKKQVDYKCSRSSGRDECCKVESRHQQCTEPESPSYRLALRSLFSCRNXXXX 120
ASRKVDEKDKKQVDYKCSRSSGRDECCKVESRHQQCTEPESPSYRLALRSLFSCRN
Sbjct: 61 ASRKVDEKDKKQVDYKCSRSSGRDECCKVESRHQQCTEPESPSYRLALRSLFSCRNSSSS 120
Query: 121 XXXXXXXXXXXDGKKLGCNSASICKVKQDNPMQQHMRRAEDELKVKDKPPVAEPYCKRRA 180
DGKKLGCNSASICKVKQDNPMQQHMRRAEDELKVKDKPPVAEPYCKRRA
Sbjct: 121 SHAGHHHHRAADGKKLGCNSASICKVKQDNPMQQHMRRAEDELKVKDKPPVAEPYCKRRA 180
Query: 181 SVSACNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRGMQQLSLRRL 240
SVSACNI FRGMQQLSLRRL
Sbjct: 181 SVSACNISSERSVKKSVKQQQQEASSSLQSSASISASSCSSTAGGGGSFRGMQQLSLRRL 240
Query: 241 SGCYECHMVVDPISGVFRDSSSMRATICSCPDCGEIFVRPDSLHLHQSIRHAVSELGAED 300
SGCYECHMVVDPISGVFRDSSSMRATICSCPDCGEIFVRPDSLHLHQSIRHAVSELGAED
Sbjct: 241 SGCYECHMVVDPISGVFRDSSSMRATICSCPDCGEIFVRPDSLHLHQSIRHAVSELGAED 300
Query: 301 TSRNIISIIFQSSWLKKQSPVCAIDRILKVHNAARTLARFDDYRAAVKAKAMAHRHPRCT 360
TSRNIISIIFQSSWLKKQSPVCAIDRILKVHNAARTLARFDDYRAAVKAKAMAHRHPRCT
Sbjct: 301 TSRNIISIIFQSSWLKKQSPVCAIDRILKVHNAARTLARFDDYRAAVKAKAMAHRHPRCT 360
Query: 361 ADGNELLRFHCATLSCDLGLHGATHLCDHLSCAACAIIRHGFRPPAPGAGIRTMATSGRA 420
ADGNELLRFHCATLSCDLGLHGATHLCDHLSCAACAIIRHGFRPPAPGAGIRTMATSGRA
Sbjct: 361 ADGNELLRFHCATLSCDLGLHGATHLCDHLSCAACAIIRHGFRPPAPGAGIRTMATSGRA 420
Query: 421 HDAVVSSGSEGDRRAMLVCRVIAGRVRRXXXXXXXXXXXXXXYDSVAGTTPGLYSNLDEL 480
HDAVVSSGSEGDRRAMLVCRVIAGRVRR YDSVAGTTPGLYSNLDEL
Sbjct: 421 HDAVVSSGSEGDRRAMLVCRVIAGRVRREEAAAAAAEEEEEEYDSVAGTTPGLYSNLDEL 480
Query: 481 DVFNPTAILPCFVVVYRA 498
DVFNPTAILPCFVVVYRA
Sbjct: 481 DVFNPTAILPCFVVVYRA 498
>Os11g0169400 Zinc finger, C2H2-type domain containing protein
Length = 416
Score = 281 bits (719), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 154/280 (55%), Positives = 190/280 (67%), Gaps = 28/280 (10%)
Query: 229 FRGMQQLSLRRLSGCY-ECHMVVDPISGVFRDSSSMRATICSCPDCGEIFVRPDSLHLHQ 287
FR MQ +R+LSGCY CH V+DP ++ A + SCPDC E+FV+PDSL LH+
Sbjct: 150 FRAMQ---IRKLSGCYLHCHSVLDP--------RTLAAVVFSCPDCDEVFVKPDSLELHR 198
Query: 288 SIRHAVSELGAEDTSRNIISIIFQSSWLKKQSPVCAIDRILKVHNAARTLARFDDYRAAV 347
S RHAVSELGA+DTSRNI+ IIFQSSWLKK +PVC I+RILKV ++ +T+ RF+ ++ AV
Sbjct: 199 STRHAVSELGADDTSRNIVEIIFQSSWLKKNAPVCRIERILKVQSSDKTIKRFEQHKEAV 258
Query: 348 KAKA-----MAHRHPRCTADGNELLRFHCATLSCDLGLHGATHLC------DHLSCAACA 396
K KA A R+PRC ADGNELLRFHC T +C LGL G T LC L C C+
Sbjct: 259 KEKARSAGDEAGRNPRCVADGNELLRFHCTTFACSLGLAGGTALCCASSSPPPLHCKLCS 318
Query: 397 IIRHGFRPPAPGAGIRTMATSGRAHDAVVSSGSEGDRRAMLVCRVIAGRVRRXXXXXXXX 456
II+ GFR G I TMATSGRAHD S +G++RAMLVCRV+AGRV++
Sbjct: 319 IIKDGFRVDGNGR-ITTMATSGRAHDTAEVS-PDGEKRAMLVCRVVAGRVKKLHSSNSSE 376
Query: 457 XXXXXXYDSVAGTTPGLYSNLDELDVFNPTAILPCFVVVY 496
DSV+ + G+YS+LDEL VF+P AILPCFVV+Y
Sbjct: 377 DHDC---DSVSPCSEGVYSDLDELFVFSPRAILPCFVVIY 413
>Os04g0115500 Zinc finger, C2H2-type domain containing protein
Length = 480
Score = 254 bits (649), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/272 (55%), Positives = 180/272 (66%), Gaps = 17/272 (6%)
Query: 236 SLRRLSGCYECHMV-VDPISGVFRDSSSMRATICSCPDCGEIFVRPDSLHLHQSIRHAVS 294
SLR LSGCYEC + V+P+S + + C+C CGE+F + DSL HQ+IRHAVS
Sbjct: 212 SLRGLSGCYECRAINVEPMSRRYPRPREL----CACSQCGEVFNKADSLEHHQAIRHAVS 267
Query: 295 ELGAEDTSRNIISIIFQSSWLKKQSPVCAIDRILKVHNAARTLARFDDYRAAVKAKAMAH 354
ELG ED+ RNI+ IIF+SSW K+ P+C IDRILKVHNAART+ARF+ YR AV+ + A
Sbjct: 268 ELGPEDSGRNIVEIIFKSSWQKRDRPICQIDRILKVHNAARTVARFEAYRDAVRTRCRAT 327
Query: 355 RHPRCTADGNELLRFHCATLSCDLGLHGATHLC-DHLSCAACAIIRHGFRPPAPGA---G 410
ADGNELLRFH A L+C LGL+GAT LC D +C CA IRHGF P A GA G
Sbjct: 328 AARA-AADGNELLRFHPAALACPLGLNGATSLCDDDDACGVCAAIRHGFAPWA-GAHPLG 385
Query: 411 IRTMATSGRAHDAVVSSGSEGDR---RAMLVCRVIAGRVRRXXXXXXXXXXXXXXYDSVA 467
+RT A+SGRAHD ++ + RAMLVCRVIAGRVRR +DSVA
Sbjct: 386 VRTTASSGRAHDCGAAAAAAQQAGGCRAMLVCRVIAGRVRR-NDDDGGAEEEEGAFDSVA 444
Query: 468 G--TTPGLYSNLDELDVFNPTAILPCFVVVYR 497
G +Y NL+EL V NP AILPCFVV+YR
Sbjct: 445 GDEAASSVYGNLEELFVANPRAILPCFVVIYR 476
>Os01g0785900 Zinc finger, C2H2-type domain containing protein
Length = 485
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 155/244 (63%), Gaps = 16/244 (6%)
Query: 269 SCPDCGEIFVRPDSLHLHQSIRHAVSELGAEDTSRNIISIIFQSSWLKKQSPVCAIDRIL 328
SC CGE F + ++L H +HAV+EL D+SR I+ II ++S LK +S I+R+
Sbjct: 244 SCHRCGEQFSKWEALEAHHLSKHAVTELVEGDSSRKIVEIICRTSLLKSESSCVRIERVF 303
Query: 329 KVHNAARTLARFDDYRAAVKAKA--MAHRHPRCTADGNELLRFHCATLSCDL-GLHGATH 385
KVHN RTLARF++YR AVK KA + +HPRC ADGNELLRFH ATLSC L G G++
Sbjct: 304 KVHNTQRTLARFEEYREAVKLKASKLPKKHPRCLADGNELLRFHGATLSCALGGAAGSSS 363
Query: 386 LCDHLSCAACAIIRHGF---RPPAPGAGIRTMATSGRAHDAVVSSGSE---GD-----RR 434
LC CA C IIRHGF + G G+ T +TSGRA++++ +S GD R+
Sbjct: 364 LCASDKCAVCRIIRHGFSAKKEGKAGVGVFTTSTSGRAYESIEASAGAVVGGDDPAATRK 423
Query: 435 AMLVCRVIAGRVRRXXXXXXXXXXXXXXYDSVAGTTPGLYSNLDELDVFNPTAILPCFVV 494
A+LVCRVIAGRV + +DS+AG G YSN++EL + NP A+LPCFVV
Sbjct: 424 ALLVCRVIAGRVHK-PLENLKEFAGQTGFDSLAGKV-GPYSNIEELYLLNPRALLPCFVV 481
Query: 495 VYRA 498
+ +A
Sbjct: 482 ICKA 485
>Os06g0683000 Zinc finger, C2H2-type domain containing protein
Length = 465
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 13/237 (5%)
Query: 270 CPDCGEIFVRPDSLHLHQSIRHAVSELGAEDTSRNIISIIFQSSWLKKQSPVCAIDRILK 329
C CG+ F D+L H RHAV+EL D+SR ++ II ++ W K ++ + I+R++K
Sbjct: 228 CHRCGDRFANHDALESHHHSRHAVTELVEGDSSRKVVEIICKAGWAKTENALGRIERVVK 287
Query: 330 VHNAARTLARFDDYRAAVKAKA--MAHRHPRCTADGNELLRFHCATLSCDLGLHGATHLC 387
VHNA R++ARF+++R AVK KA ++ +HPRC ADGNELLRFH TL+C LG ++ LC
Sbjct: 288 VHNAERSVARFEEFREAVKGKAARLSKKHPRCLADGNELLRFHATTLACSLGAGDSSTLC 347
Query: 388 DHLSCAACAIIRHGF---RPPAPGAGIRTMATSGRAHDAVVSSG------SEGDRRAMLV 438
SC+ C IIRHGF R G G+ T +TS RA + + G + G R+A+LV
Sbjct: 348 TSGSCSVCRIIRHGFSATREIKDGVGVFTTSTSKRALECIAGDGDGDEAANAGVRKALLV 407
Query: 439 CRVIAGRVRRXXXXXXXXXXXXXXYDSVAGTTPGLYSNLDELDVFNPTAILPCFVVV 495
CRV+AGR+ R +DSVAG G Y++++EL + NP A+LPCFVV+
Sbjct: 408 CRVVAGRIHR-PLENLQEVAAQPGFDSVAGKV-GAYASIEELYLLNPRALLPCFVVI 462
>Os03g0264600 Zinc finger, C2H2-type domain containing protein
Length = 454
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 139/264 (52%), Gaps = 39/264 (14%)
Query: 260 SSSMRATICSCPDCGEIFVRPDSLHLHQSIRHAVSELGAEDTSRNIISIIFQSSWLKKQS 319
S + R + C CGE+ +P L LHQ+++H++SEL + D+S NII +IF + W
Sbjct: 201 SFAARGDVFPCKVCGEVLSKPQQLELHQAMKHSLSELSSLDSSMNIIRMIFLAGWKPAVM 260
Query: 320 PVC----AIDRILKVHNAARTLARFDDYRAAVKAKAMAHR--------HPRCTADGNELL 367
P ++ RIL++H+ R L RF++YR V+A+A RC ADGNE L
Sbjct: 261 PGAGEPPSVRRILRIHHNPRVLTRFEEYRDLVRARAARRCAGAGAAAVEERCVADGNERL 320
Query: 368 RFHCATLSCDLGLHGATHLCDHLSCAACAIIRHGFRPPAPGAGIRTMAT--SGRAHDAVV 425
RF+C+T+ C LG +C C C+I+RHGF A + +AT SGRA A +
Sbjct: 321 RFYCSTMLCTLG----AGVCGSPYCCTCSILRHGFA--GKQADVDGIATYSSGRAAHASL 374
Query: 426 SSGSEGD------RRAMLVCRVIAGRVRRXXXXXXXXXXXXXXYDSVAGTTP------GL 473
E + RRAMLVCRV+AGRV R YDS+ P
Sbjct: 375 PDDVEREFAFLQVRRAMLVCRVVAGRVGR------GAADDKVAYDSMVPLLPTSSFAAAT 428
Query: 474 YSNLD-ELDVFNPTAILPCFVVVY 496
+ D EL VFNP A+LPCFV++Y
Sbjct: 429 RGDDDVELLVFNPRAVLPCFVIIY 452
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,328,576
Number of extensions: 509068
Number of successful extensions: 1683
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1658
Number of HSP's successfully gapped: 7
Length of query: 498
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 393
Effective length of database: 11,553,331
Effective search space: 4540459083
Effective search space used: 4540459083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 158 (65.5 bits)