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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0264600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.64 (0.0322) R2 : 0.313
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.92 (0.149) R2dE : 0.268 R2E : 0.296
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.199 (0.0696) R2dN8 : 0.0171 R2N8 : 0.0446
σ : 0.599
deviance : 165.62
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C
peak time of C : --
E
wheather : temperature
threshold : 23.65
memory length : 2
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.97 0.583 3.6 0.685 0.197 2.08 -0.43 -0.597 -0.086 7.72 23.78 2 -- --
154.51 0.579 3.61 0.605 0.2 2.14 -0.377 -- -0.106 7.47 23.7 2 -- --
154.48 0.579 3.6 0.661 0.197 2.09 -- -0.504 -0.0894 7.68 23.76 2 -- --
154.89 0.58 3.61 0.599 0.201 2.15 -- -- -0.102 7.77 23.7 2 -- --
156.55 0.583 3.61 0.663 -- 2.04 -- -0.539 -0.0875 -- 23.83 2 -- --
217.83 0.692 3.69 0.124 0.359 -- -0.213 -- -0.43 3.13 -- -- -- --
217.97 0.691 3.69 0.129 0.358 -- -- -- -0.429 3.02 -- -- -- --
157.02 0.584 3.62 0.593 -- 2.11 -- -- -0.106 -- 23.7 2 -- --
163.52 0.596 3.63 -- 0.2 1.93 -- -- -0.203 6.89 23.6 2 -- --
225.31 0.701 3.69 0.144 -- -- -- -- -0.419 -- -- -- -- --
218.41 0.691 3.69 -- 0.36 -- -- -- -0.443 3.02 -- -- -- --
165.62 0.599 3.64 -- -- 1.92 -- -- -0.199 -- 23.65 2 -- --
225.85 0.701 3.69 -- -- -- -- -- -0.435 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.35 temperature 25 10 < th dose dependent rect. 4 23
10 154.20 temperature 25 10 < th dose dependent rect. 16 22
19 154.62 temperature 25 270 < th dose dependent rect. 7 23
30 154.94 temperature 25 10 < th dose dependent rect. 23 23
33 155.26 temperature 25 10 < th dose dependent rect. 11 23
36 155.31 temperature 25 10 < th dose dependent rect. 19 23
37 155.32 temperature 25 10 < th dose dependent no NA NA
38 155.36 temperature 25 10 < th dose dependent rect. 9 23
41 155.39 temperature 25 270 < th dose dependent rect. 1 23
45 155.42 temperature 25 270 < th dose dependent rect. 15 21
47 155.44 temperature 25 30 < th dose dependent rect. 13 23
52 155.54 temperature 25 30 < th dose dependent rect. 21 23
57 155.67 temperature 25 30 < th dose dependent rect. 1 23
64 155.79 temperature 25 30 < th dose dependent rect. 7 23
87 156.33 temperature 25 270 < th dose dependent no NA NA
103 156.76 temperature 25 270 < th dose dependent rect. 19 23
211 159.67 temperature 10 720 > th dose dependent rect. 16 16
233 160.08 temperature 10 720 > th dose dependent sin 13 NA
234 160.08 temperature 30 720 < th dose dependent rect. 15 15
291 160.94 temperature 30 720 < th dose dependent sin 13 NA
414 162.45 temperature 15 720 > th dose dependent rect. 11 21
543 163.28 temperature 25 1440 < th dose dependent sin 18 NA
608 163.66 temperature 30 720 < th dose dependent rect. 18 9
663 163.93 temperature 25 1440 < th dose dependent rect. 21 22
697 164.03 temperature 25 1440 < th dose dependent rect. 23 23
851 164.60 temperature 25 1440 < th dose dependent sin 2 NA
901 164.79 temperature 10 720 > th dose dependent rect. 6 23
981 165.12 temperature 10 1440 > th dose dependent rect. 21 21