BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0690100 Os04g0690100|AK099856
(498 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G75710.1 | chr1:28428806-28431128 FORWARD LENGTH=463 271 5e-73
AT5G54630.1 | chr5:22192607-22194260 REVERSE LENGTH=473 213 2e-55
AT4G27240.1 | chr4:13640160-13641640 FORWARD LENGTH=432 206 2e-53
AT2G29660.1 | chr2:12679346-12680467 FORWARD LENGTH=374 192 3e-49
AT1G11490.1 | chr1:3868884-3870065 REVERSE LENGTH=366 131 1e-30
AT4G22560.1 | chr4:11880178-11880972 FORWARD LENGTH=265 110 2e-24
AT1G62520.1 | chr1:23144506-23145348 FORWARD LENGTH=281 110 2e-24
AT4G12450.1 | chr4:7385841-7386674 REVERSE LENGTH=278 108 8e-24
>AT1G75710.1 | chr1:28428806-28431128 FORWARD LENGTH=463
Length = 462
Score = 271 bits (694), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 148/297 (49%), Positives = 184/297 (61%), Gaps = 40/297 (13%)
Query: 229 FRGMQQLSLRRLSGCYECHMVVDPISGVFRDSSSMRATICSCPDCGEIFVRPDSLHLHQS 288
FR MQ R+LSGCYECHM+VDP + +C+C CGE+F + +SL LHQ+
Sbjct: 174 FRAMQ---FRKLSGCYECHMIVDP------SRYPISPRVCACSQCGEVFPKLESLELHQA 224
Query: 289 IRHAVSELGAEDTSRNIISIIFQSSWLKKQSPVCAIDRILKVHNAARTLARFDDYRAAVK 348
+RHAVSELG ED+ RNI+ IIF+SSWLKK SP+C I+RILKVHN RT+ RF+D R AVK
Sbjct: 225 VRHAVSELGPEDSGRNIVEIIFKSSWLKKDSPICQIERILKVHNTQRTIQRFEDCRDAVK 284
Query: 349 AKAM--AHRHPRCTADGNELLRFHCATLSCDLGLHGATHLCDHLS-CAACAIIRH----- 400
A+A+ + RC ADGNELLRFHC TL+C LG G++ LC +L C C +IRH
Sbjct: 285 ARALQATRKDARCAADGNELLRFHCTTLTCSLGARGSSSLCSNLPVCGVCTVIRHGFQGK 344
Query: 401 --GFRPPAPGAGIRTMATSGRAHDAVVSSGSEGDRRAMLVCRVIAGRVRRXXXXXXXXXX 458
G AG+RT A+SGRA D + S+ RR MLVCRVIAGRV+R
Sbjct: 345 SGGGGANVANAGVRTTASSGRADDLL--RCSDDARRVMLVCRVIAGRVKRVDLPAADASA 402
Query: 459 XXX------------------XYDSVAGTTPGLYSNLDELDVFNPTAILPCFVVVYR 497
+DSVA G+YSNL+EL V+NP AILPCFVV+Y+
Sbjct: 403 TAEKKSTVEDNSVVGVSSSGGTFDSVA-VNAGVYSNLEELVVYNPRAILPCFVVIYK 458
>AT5G54630.1 | chr5:22192607-22194260 REVERSE LENGTH=473
Length = 472
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 154/239 (64%), Gaps = 13/239 (5%)
Query: 269 SCPDCGEIFVRPDSLHLHQSIRHAVSELGAEDTSRNIISIIFQSSWLKKQSPVCAIDRIL 328
SC CGE F + ++ H +HAV+EL D+SR I+ II ++SWLK ++ IDR+L
Sbjct: 232 SCHKCGEQFNKLEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIDRVL 291
Query: 329 KVHNAARTLARFDDYRAAVKAKA--MAHRHPRCTADGNELLRFHCATLSCDLGLHGATHL 386
KVHN +TLARF++YR VK +A + +HPRC ADGNELLRFH T++C LG++G+T +
Sbjct: 292 KVHNMQKTLARFEEYRETVKIRASKLQKKHPRCLADGNELLRFHGTTVACGLGINGSTSV 351
Query: 387 CDHLSCAACAIIRHGF---RPPAPGAGIRTMATSGRAHDAVVSSGSE--GD-----RRAM 436
C C C IIR+GF R G G+ T +TSGRA ++++ +G + GD R+ +
Sbjct: 352 CTAEKCCVCRIIRNGFSSKREKNNGVGVFTASTSGRAFESILVNGGDESGDVDRTVRKVL 411
Query: 437 LVCRVIAGRVRRXXXXXXXXXXXXXXYDSVAGTTPGLYSNLDELDVFNPTAILPCFVVV 495
+VCRVIAGRV R +DS+AG GLY+N++EL + NP A+LPCFVV+
Sbjct: 412 IVCRVIAGRVHRPVENVEEMNGLMSGFDSLAGKV-GLYTNVEELYLLNPKALLPCFVVI 469
>AT4G27240.1 | chr4:13640160-13641640 FORWARD LENGTH=432
Length = 431
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 151/233 (64%), Gaps = 7/233 (3%)
Query: 269 SCPDCGEIFVRPDSLHLHQSIRHAVSELGAEDTSRNIISIIFQSSWLKKQSPVCAIDRIL 328
SC CGE F + ++ H +HAV+EL D+SR I+ II ++SWLK ++ IDRIL
Sbjct: 197 SCHKCGEKFSKLEAAEAHHLTKHAVTELMEGDSSRRIVEIICRTSWLKTENQGGRIDRIL 256
Query: 329 KVHNAARTLARFDDYRAAVKAKA--MAHRHPRCTADGNELLRFHCATLSCDLGLHGATHL 386
KVHN +TLARF++YR VK +A + +HPRC ADGNELLRFH T++C LG++G+T L
Sbjct: 257 KVHNMQKTLARFEEYRDTVKIRASKLQKKHPRCIADGNELLRFHGTTVACALGINGSTSL 316
Query: 387 CDHLSCAACAIIRHGF---RPPAPGAGIRTMATSGRAHDA-VVSSGSEGDRRAMLVCRVI 442
C C C IIR+GF R G G+ T +TS RA ++ V+ G GDR+A++VCRVI
Sbjct: 317 CSSEKCCVCRIIRNGFSAKREMNNGIGVFTASTSERAFESIVIGDGGGGDRKALIVCRVI 376
Query: 443 AGRVRRXXXXXXXXXXXXXXYDSVAGTTPGLYSNLDELDVFNPTAILPCFVVV 495
AGRV R +DS+AG GLY+N++EL + N A+LPCFV++
Sbjct: 377 AGRVHRPVENVEEMGGLLSGFDSLAGKV-GLYTNVEELYLLNSRALLPCFVLI 428
>AT2G29660.1 | chr2:12679346-12680467 FORWARD LENGTH=374
Length = 373
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 146/251 (58%), Gaps = 25/251 (9%)
Query: 267 ICSCPDCGEIFVRPDSLHLHQSIRHAVSELGAEDTSRNIISIIFQSSWLKK---QSPVCA 323
I C CGEIF + + L H +I+HAVSEL A ++S NI+ IIF+S W ++ +SPV
Sbjct: 125 IFPCNSCGEIFPKINLLENHIAIKHAVSELIAGESSTNIVKIIFKSGWPEQGNYKSPV-- 182
Query: 324 IDRILKVHNAARTLARFDDYRAAVKAKAMAHR-------HPRCTADGNELLRFHCATLSC 376
I+RILK+HN+++ L RF++YR VKAKA RC ADGNELLRF+C+T C
Sbjct: 183 INRILKIHNSSKILTRFEEYREFVKAKAARSNGGGRRWDDERCVADGNELLRFYCSTFMC 242
Query: 377 DLGLHGATHLCDHLSCAACAIIRHGFRPPAPGAGIRTMATSGRAHDAVVSS-----GSEG 431
DLG +G ++LC H C+ C II GF P GI T+AT R H AV G
Sbjct: 243 DLGQNGKSNLCGHQYCSICGIIGSGFSPKLD--GIATLATGWRGHVAVPEEVEEEFGFMN 300
Query: 432 DRRAMLVCRVIAGRVR-RXXXXXXXXXXXXXXYDSVAGTTPGLYSNL-----DELDVFNP 485
+RAMLVCRV+AGRV YDS+ G + L DEL VFNP
Sbjct: 301 VKRAMLVCRVVAGRVGCDLIDDDDVDKSDGGGYDSLVGQSGNKSGALLRIDDDELLVFNP 360
Query: 486 TAILPCFVVVY 496
A+LPCFV+VY
Sbjct: 361 RAVLPCFVIVY 371
>AT1G11490.1 | chr1:3868884-3870065 REVERSE LENGTH=366
Length = 365
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 125/241 (51%), Gaps = 12/241 (4%)
Query: 267 ICSCPDCGEIFVRPDSLHLHQSIRHAVSELGAEDTSRNIISIIFQSSWLKKQSPVCA--I 324
+ +C C E D+ H H+V L A D SR + +I + + K + I
Sbjct: 126 VLACQKCHERVRDLDAFEAHYLSNHSVVRLLAGDFSRTTVELICNTGYSHKLGKMKGNNI 185
Query: 325 DRILKVHNAARTLARFDDYRAAVKAKA--MAHRHPRCTADGNELLRFHCATLSCDLGL-H 381
I K+ N R +A F+DYR VK +A ++ +H RC ADGNE L FH TLSC LG +
Sbjct: 186 SAIFKIQNLQRVVADFEDYRELVKIRANKLSKKHSRCMADGNEFLGFHGTTLSCTLGFSN 245
Query: 382 GATHLCDHLSCAACAIIRHGFRPPAPGAGIRTMATSGRAHDAVVSSGSEGDRR-----AM 436
+++LC C C I+RHGF P GI+ + T+ + A+ S ++ R A+
Sbjct: 246 SSSNLCFSDHCEVCHILRHGFSPKTRPDGIKGVLTASTSSTALESIETDQGRNRGSLIAV 305
Query: 437 LVCRVIAGRVRRXXXXXXXXXXXXXXYDSVAGTTPGLYSNLDELDVFNPTAILPCFVVVY 496
++CRVIAGRV + +DS+A G S ++EL + + A+LPCFV+++
Sbjct: 306 VLCRVIAGRVHK-PMQTFENSLGFSEFDSLA-LKVGQNSRIEELYLLSTKALLPCFVIIF 363
Query: 497 R 497
+
Sbjct: 364 K 364
>AT4G22560.1 | chr4:11880178-11880972 FORWARD LENGTH=265
Length = 264
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 114/237 (48%), Gaps = 48/237 (20%)
Query: 269 SCPDCGEIFVRPDSLHLHQSIR--HAVSELGAEDTSRNIISIIFQSSWLKKQSPVCAIDR 326
SC E+ P+ +S R A++EL SRN++ IIF SSW + P I+
Sbjct: 67 SCRTETELLNPPNRTRRSKSARTSDALTELPDGHPSRNVVEIIFHSSWSSDEFP-GRIEM 125
Query: 327 ILKVHNAARTLARFDDYRAAVKAKAMAH------RHPRCTADGNELLRFHCATLSCDLGL 380
I KV + +RT+ RF++YR VK++A + RC ADGNE++RF+
Sbjct: 126 IFKVEHGSRTVTRFEEYREVVKSRAGFNGGTCEEEDARCLADGNEMMRFY---------- 175
Query: 381 HGATHLCDHLSCAACAIIRHGFRPPAPGAGIRTMATSGRAHDAVVSSGSEGDRRAMLVCR 440
+ D + AC G + T + SG A+ VSSG G R+AM++CR
Sbjct: 176 ----PVLDGFNGGACVF------AGGKGQAVCTFSGSGEAY---VSSGGGGGRKAMMICR 222
Query: 441 VIAGRVRRXXXXXXXXXXXXXXYDSVAGTTPGLYSNLDELDVFNPTAILPCFVVVYR 497
VIAGRV DSVAG EL VF+ A+LPCF++++R
Sbjct: 223 VIAGRVDDVIGFGS---------DSVAGRD-------GELFVFDTRAVLPCFLIIFR 263
>AT1G62520.1 | chr1:23144506-23145348 FORWARD LENGTH=281
Length = 280
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 107/210 (50%), Gaps = 33/210 (15%)
Query: 292 AVSELGAEDTSRNIISIIFQSSWLKKQSPVCA-IDRILKVHNAARTLARFDDYRAAVKAK 350
++EL SRN++ IIFQ+SW K P ++ I KV N ++TL RF++YR AVKA+
Sbjct: 99 TLTELSEGHQSRNVVEIIFQTSWGPK--PFSGRVEMIFKVQNGSKTLTRFEEYREAVKAR 156
Query: 351 AMA---HRHPRCTADGNELLRFHCATLSCDLGLHGATHLCDHLSCAACAIIRHGFRPPAP 407
++ + R ADGNE +RF+C L G G+
Sbjct: 157 SVGKAREENARSVADGNETMRFYC--LGPSYGGGGSAWGILGGKGGG------------- 201
Query: 408 GAGIRTMATSGRAHDAVVSSGSEGDRRAMLVCRVIAGRVRRXXXXXXXXXXXXXXYDSVA 467
A I T A S A++ + G +G R+AMLVCRVIAGRV + +DSV+
Sbjct: 202 -ASIYTFAGSSTANEK--AGGGKG-RKAMLVCRVIAGRVTK-QNELKYDSDLRSRFDSVS 256
Query: 468 GTTPGLYSNLDELDVFNPTAILPCFVVVYR 497
G + EL VF+ A+LPCF+++YR
Sbjct: 257 G-------DDGELLVFDTRAVLPCFLIIYR 279
>AT4G12450.1 | chr4:7385841-7386674 REVERSE LENGTH=278
Length = 277
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 109/223 (48%), Gaps = 49/223 (21%)
Query: 287 QSIRHAVSELGAEDTSRNIISIIFQSSWLKKQSPVCAIDRILKVHNAARTLARFDDYRAA 346
+S+ +++L SRN++ IIFQSSW + P ++ I KV N ++ + RF++YR A
Sbjct: 91 ESVLPVLTDLPDGHPSRNVVEIIFQSSWSSDEFP-GRVEMIFKVENGSKAVTRFEEYREA 149
Query: 347 VKAKAMAH------------RHPRCTADGNELLRFHCATLSCDLGLHGATHLCDHLSCAA 394
VK+++ + + RC+ADGNE++RF GA
Sbjct: 150 VKSRSCSKVDSDRVDGSACDENARCSADGNEMMRFFPLGPIPGGINGGA----------- 198
Query: 395 CAIIRHGFRPPAPGAGIRTMATSGRAHDAVVSSGSEGDRRAMLVCRVIAGRVRRXXXXXX 454
GF P GA + T + SG AH S+G G RRAML+CRVIAGRV +
Sbjct: 199 -----WGF-PGGKGAAVCTFSGSGEAH---ASTGGGGGRRAMLICRVIAGRVAKKGEFGS 249
Query: 455 XXXXXXXXYDSVAGTTPGLYSNLDELDVFNPTAILPCFVVVYR 497
DSVAG EL VF+ A+LPCF++ +R
Sbjct: 250 ---------DSVAGRA-------GELIVFDARAVLPCFLIFFR 276
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,813,942
Number of extensions: 299445
Number of successful extensions: 946
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 10
Length of query: 498
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 395
Effective length of database: 8,282,721
Effective search space: 3271674795
Effective search space used: 3271674795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 114 (48.5 bits)