BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0160100 Os11g0160100|AK065597
(688 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0160100 Zinc finger, FYVE/PHD-type domain containing p... 1429 0.0
Os12g0161500 Hypothetical protein 171 2e-42
Os12g0161700 Hypothetical protein 99 1e-20
Os11g0292000 Zinc finger, FYVE/PHD-type domain containing p... 81 3e-15
Os03g0421000 Zinc finger, FYVE/PHD-type domain containing p... 79 2e-14
Os03g0213600 Conserved hypothetical protein 73 7e-13
>Os11g0160100 Zinc finger, FYVE/PHD-type domain containing protein
Length = 688
Score = 1429 bits (3698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/688 (100%), Positives = 688/688 (100%)
Query: 1 MNVLCEVCGDVGWEELILHCNKCKNATRHQYCFDPVIYDGSLVEWLCDDCLPNGNEVGNL 60
MNVLCEVCGDVGWEELILHCNKCKNATRHQYCFDPVIYDGSLVEWLCDDCLPNGNEVGNL
Sbjct: 1 MNVLCEVCGDVGWEELILHCNKCKNATRHQYCFDPVIYDGSLVEWLCDDCLPNGNEVGNL 60
Query: 61 LDISNQKKSSQTELGFSITKETNVKKMKLTKGLWSWGHHRNRSFKARCDGSDSKTKHFAS 120
LDISNQKKSSQTELGFSITKETNVKKMKLTKGLWSWGHHRNRSFKARCDGSDSKTKHFAS
Sbjct: 61 LDISNQKKSSQTELGFSITKETNVKKMKLTKGLWSWGHHRNRSFKARCDGSDSKTKHFAS 120
Query: 121 GNAFSSSEVVTGEISKINDCEMEGRGKNEYSSHSALDHASRVEQHINIQNPMGIIKPSLN 180
GNAFSSSEVVTGEISKINDCEMEGRGKNEYSSHSALDHASRVEQHINIQNPMGIIKPSLN
Sbjct: 121 GNAFSSSEVVTGEISKINDCEMEGRGKNEYSSHSALDHASRVEQHINIQNPMGIIKPSLN 180
Query: 181 SIKRLNLSNEKDDRFSSSDHVEGSIPQVNHVERAHLMIEDGSNPTFTCVEHMDLVHKKQL 240
SIKRLNLSNEKDDRFSSSDHVEGSIPQVNHVERAHLMIEDGSNPTFTCVEHMDLVHKKQL
Sbjct: 181 SIKRLNLSNEKDDRFSSSDHVEGSIPQVNHVERAHLMIEDGSNPTFTCVEHMDLVHKKQL 240
Query: 241 LQPSSLERNSIGTSIPCSENMDVLHKMQLLKPSPLDKKYVDRSIPNSENMDVVLMRRSCT 300
LQPSSLERNSIGTSIPCSENMDVLHKMQLLKPSPLDKKYVDRSIPNSENMDVVLMRRSCT
Sbjct: 241 LQPSSLERNSIGTSIPCSENMDVLHKMQLLKPSPLDKKYVDRSIPNSENMDVVLMRRSCT 300
Query: 301 LNNSMGSCEKQVVTKVDPIEPSRQFDRACLEVSSNAHEIHEADDGSKGAQSIKNGKPKKQ 360
LNNSMGSCEKQVVTKVDPIEPSRQFDRACLEVSSNAHEIHEADDGSKGAQSIKNGKPKKQ
Sbjct: 301 LNNSMGSCEKQVVTKVDPIEPSRQFDRACLEVSSNAHEIHEADDGSKGAQSIKNGKPKKQ 360
Query: 361 RRLILPYEEDKDAEPIQVDDMNRQSCGINGQVKKPVEIVASLGDINAGCGQNVCSQLALP 420
RRLILPYEEDKDAEPIQVDDMNRQSCGINGQVKKPVEIVASLGDINAGCGQNVCSQLALP
Sbjct: 361 RRLILPYEEDKDAEPIQVDDMNRQSCGINGQVKKPVEIVASLGDINAGCGQNVCSQLALP 420
Query: 421 TIAVKGQCGLSSTPFIPKYFCVQPIDEPNWTGIMKIGTNYIPVGAHFSNKACKKVCELSM 480
TIAVKGQCGLSSTPFIPKYFCVQPIDEPNWTGIMKIGTNYIPVGAHFSNKACKKVCELSM
Sbjct: 421 TIAVKGQCGLSSTPFIPKYFCVQPIDEPNWTGIMKIGTNYIPVGAHFSNKACKKVCELSM 480
Query: 481 SLPQIMKVTELPKLKAWPKSWEKASVPSAESIGLFFFSQNTRSNKEFDDLVKHVIDYDIV 540
SLPQIMKVTELPKLKAWPKSWEKASVPSAESIGLFFFSQNTRSNKEFDDLVKHVIDYDIV
Sbjct: 481 SLPQIMKVTELPKLKAWPKSWEKASVPSAESIGLFFFSQNTRSNKEFDDLVKHVIDYDIV 540
Query: 541 LETDVSFAKLLVFPSVVLPAEYRVFQGKHYLWGVFKRSKDMAERDALVEQNCTTCLADED 600
LETDVSFAKLLVFPSVVLPAEYRVFQGKHYLWGVFKRSKDMAERDALVEQNCTTCLADED
Sbjct: 541 LETDVSFAKLLVFPSVVLPAEYRVFQGKHYLWGVFKRSKDMAERDALVEQNCTTCLADED 600
Query: 601 VPEQNALDIVPCKALDQEMALVVSDIHHDNQPSLTTSQVVESEASSDKGPSHPVINSPER 660
VPEQNALDIVPCKALDQEMALVVSDIHHDNQPSLTTSQVVESEASSDKGPSHPVINSPER
Sbjct: 601 VPEQNALDIVPCKALDQEMALVVSDIHHDNQPSLTTSQVVESEASSDKGPSHPVINSPER 660
Query: 661 PMYLILDTSCKVLKKWSCERMDTKLSML 688
PMYLILDTSCKVLKKWSCERMDTKLSML
Sbjct: 661 PMYLILDTSCKVLKKWSCERMDTKLSML 688
>Os12g0161500 Hypothetical protein
Length = 530
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/140 (55%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
Query: 439 YFCVQPIDEPNWTGIMKIGTN-YIPVGAHFSNKACKKVCELSMSLPQIMKVTELPKLKAW 497
Y C+QPIDEP W+GI KIG N YIP AH S K+CKKV +LS+S+P I++VT+L + W
Sbjct: 243 YHCIQPIDEPIWSGIFKIGGNDYIPFSAHLSTKSCKKVWDLSVSIPSIVQVTKLSRSVVW 302
Query: 498 PKSWEKASVPSAESIGLFFFSQNTRSNKEFDDLVKHVIDYDIVLETDVSFAKLLVFPSVV 557
PKS E AS P+ +SIGL+FF R +K D LVK +++ D+ L + A++L+FPS +
Sbjct: 303 PKSLE-ASSPTDDSIGLYFFPPKMRLDKGMDQLVKEIVEKDMALSAVIGEAQMLMFPSTL 361
Query: 558 LPAEYRVFQGKHYLWGVFKR 577
LP +YR FQGKHYLWGVFKR
Sbjct: 362 LPEKYRTFQGKHYLWGVFKR 381
>Os12g0161700 Hypothetical protein
Length = 247
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Query: 478 LSMSLPQIMKVTELPKLKAWPKSWEKASVPSAESIGLFFFSQNTRSNKEFDDLVKHVIDY 537
LS SL ++ VT+ +L+ WP S +S + E+I LF F R + + D LVK VI+Y
Sbjct: 2 LSRSLRALVNVTKHSRLEVWPASLGTSSF-TDENIALFLFPPKMRPDGKLDQLVKEVIEY 60
Query: 538 DIVLETDVSFAKLLVFPSVVLPAEYRVFQGKHYLWGVFKRSKDM---AERDALVEQNCTT 594
D+ L + ++L+FPS +LP +Y+ FQGKHYLWG+F+ KD+ AE A
Sbjct: 61 DLALRAVMGKTEMLIFPSTMLPKQYQAFQGKHYLWGLFRPRKDIVGVAEEQAAHAMCLEN 120
Query: 595 CLADEDVPEQNALDIVPCKALDQE 618
+D EQ VP +D E
Sbjct: 121 QEGSKDGTEQVEFHGVPDPNMDTE 144
>Os11g0292000 Zinc finger, FYVE/PHD-type domain containing protein
Length = 928
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 465 AHFSNKACKKVCELSMSLPQIMKVTELPKLKAWPKSWEKASVPSAESIGLFFFSQNTRSN 524
AH S A KV E++ P +++ ELP+ WP + P+ +SI LFFF+++T S
Sbjct: 535 AHLSCFASPKVLEVAKKFPSNVQLEELPRQNLWPPQFHDNG-PTIDSIALFFFARDTESY 593
Query: 525 K-EFDDLVKHVIDYDIVLETDVSFAKLLVFPSVVLPAEYRVFQGKHYLWGVFK-RSKD 580
+ + LV++++ D+ L ++ A+LL+F S LP ++ + H+LWGVF+ R KD
Sbjct: 594 EIHYRKLVENMLKDDLALRGNIETAELLIFASNTLPNNFQRWNMFHFLWGVFRVRRKD 651
>Os03g0421000 Zinc finger, FYVE/PHD-type domain containing protein
Length = 436
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 440 FCVQPIDEPNWTGIMKI--GTNYIPVG--AHFSNKACKKVCELSMSLPQIMKVTELPKLK 495
+ QP E WTG + G+N P A+ +K KV + S+P I+++ LP++
Sbjct: 282 YARQPPPEICWTGCFLVSNGSNCNPADFKAYCPSKVSSKVLNVIKSMPSIIELDILPRMD 341
Query: 496 AWPKSWEKASVPSAESIGLFFFSQNTRSNKEFDDLVKHVIDY--DIVLETDVSFAKLLVF 553
WPKS+E + P E IGLFFFS N + HV++ + V+ ++ KLL++
Sbjct: 342 EWPKSFE-INPPVYEDIGLFFFSTELDRNGKSQS---HVMETSCNFVMRAYINNIKLLIY 397
Query: 554 PSVVLPAEYRVFQGKHYLWGVF----KRSKDM 581
S VLP + + G+ YLWGVF +R K M
Sbjct: 398 SSEVLPPDSQWIDGESYLWGVFVDPKRRHKSM 429
>Os03g0213600 Conserved hypothetical protein
Length = 1044
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 465 AHFSNKACKKVCELSMSLPQIMKVTELPKLKAWPKSWEKASVPSAESIGLFFFSQNTRSN 524
AHF + +V E S +P+I+K+ P WPK++ K P + IGL F S R N
Sbjct: 539 AHFPFEISAQVYEASKQMPEILKLEARPLSHLWPKTF-KMKPPEGQDIGLCFISSLQRPN 597
Query: 525 KEFDDLVKHVIDYDIVLETDVSFAKLLVFPSVVLPAEYRVFQGKHYLWGVFK 576
D L+K++ + I L T + +LL+F S +L EY+ K Y WGVF+
Sbjct: 598 GSSDHLLKNISSH-IGLRTKIGATELLIFSSKLLTQEYQRKCDKFYFWGVFR 648
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,096,444
Number of extensions: 1041168
Number of successful extensions: 2712
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2707
Number of HSP's successfully gapped: 6
Length of query: 688
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 580
Effective length of database: 11,396,689
Effective search space: 6610079620
Effective search space used: 6610079620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)