BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0156600 Os11g0156600|Os11g0156600
(217 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0156600 TB2/DP1 and HVA22 related protein family protein 367 e-102
Os12g0158600 TB2/DP1 and HVA22 related protein family protein 254 4e-68
Os04g0415200 TB2/DP1 and HVA22 related protein family protein 178 3e-45
Os10g0177400 TB2/DP1 and HVA22 related protein family protein 144 6e-35
Os03g0250200 TB2/DP1 and HVA22 related protein family protein 143 1e-34
Os03g0132300 TB2/DP1 and HVA22 related protein family protein 134 4e-32
Os09g0533800 128 3e-30
>Os11g0156600 TB2/DP1 and HVA22 related protein family protein
Length = 217
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/212 (85%), Positives = 181/212 (85%)
Query: 1 MLGELISKVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIACESFVSWM 60
MLGELISKVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIACESFVSWM
Sbjct: 1 MLGELISKVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIACESFVSWM 60
Query: 61 PMYGEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQRLEHLRANSGQLIAFYI 120
PMYGEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQRLEHLRANSGQLIAFYI
Sbjct: 61 PMYGEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQRLEHLRANSGQLIAFYI 120
Query: 121 KNFADKGTAFFMDFLRYVVSERPEAAANSEPQRSSWSSWNPFXXXXXXXXXXXXXXXXXX 180
KNFADKGTAFFMDFLRYVVSERPEAAANSEPQRSSWSSWNPF
Sbjct: 121 KNFADKGTAFFMDFLRYVVSERPEAAANSEPQRSSWSSWNPFASRRQEPSPPPSAPPRER 180
Query: 181 XFSGXXXXXXXXXXXXVFRASLGGGAMNRRPH 212
FSG VFRASLGGGAMNRRPH
Sbjct: 181 RFSGADPDDEPPAIADVFRASLGGGAMNRRPH 212
>Os12g0158600 TB2/DP1 and HVA22 related protein family protein
Length = 161
Score = 254 bits (648), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 138/146 (94%)
Query: 1 MLGELISKVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIACESFVSWM 60
MLGEL+S++LL+LFGYAMPAFECFKT+E RP+DAHMLRFWCQYWIIV+MVIA ES +SWM
Sbjct: 1 MLGELLSRILLLLFGYAMPAFECFKTVEARPNDAHMLRFWCQYWIIVAMVIAFESLISWM 60
Query: 61 PMYGEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQRLEHLRANSGQLIAFYI 120
PMYGEIKLAFFVYLWYPKTKGSDVVYD+F+RP VMQYEPNIEQRL HLRA SGQL++FY+
Sbjct: 61 PMYGEIKLAFFVYLWYPKTKGSDVVYDTFLRPIVMQYEPNIEQRLLHLRAKSGQLLSFYM 120
Query: 121 KNFADKGTAFFMDFLRYVVSERPEAA 146
KNFADKGTAFFMD LRYVVS++PE +
Sbjct: 121 KNFADKGTAFFMDVLRYVVSDKPEGS 146
>Os04g0415200 TB2/DP1 and HVA22 related protein family protein
Length = 192
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 105/142 (73%), Gaps = 4/142 (2%)
Query: 4 ELISKVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIACES----FVSW 59
E ++K L LFGYAMPA ECFK +E RP LRFWCQYWII+ +++ + S
Sbjct: 4 EFLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWIILVILVIFDDIAGVLTSK 63
Query: 60 MPMYGEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQRLEHLRANSGQLIAFY 119
+PMY E++LAF VYLWYP+T+G+D+VYD+F+RP VMQY+PNIE+RL +LRAN+G ++ FY
Sbjct: 64 IPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDILIFY 123
Query: 120 IKNFADKGTAFFMDFLRYVVSE 141
+KNF D+G F+ + Y+ S+
Sbjct: 124 LKNFTDRGYDLFLRGMEYIRSQ 145
>Os10g0177400 TB2/DP1 and HVA22 related protein family protein
Length = 233
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 102/159 (64%), Gaps = 7/159 (4%)
Query: 1 MLGELISKVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIACESF---- 56
M+G+ +S+VLL+ FGYA PA+EC+KT+E + L FWCQYWI+V+++ E F
Sbjct: 1 MMGDFLSRVLLLAFGYAYPAYECYKTVELNKPEIEKLIFWCQYWILVALLTVLERFGDFA 60
Query: 57 VSWMPMYGEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQRLEHLRANSGQLI 116
+SW+P+Y E KL FF+YLW P+TKG+ VY++F RP + QYE +I+ + LR +G ++
Sbjct: 61 ISWLPLYSEAKLMFFIYLWCPRTKGTSYVYETFFRPYISQYENDIDCSILDLRVRAGDML 120
Query: 117 AFYIKNFADKGTAFFMDFLRYVVSERPEAAANSEPQRSS 155
Y + A G F + L+Y ++ P A+S RS+
Sbjct: 121 VVYWQKVAIIGQTTFFNILKYASAQSP---AHSSRSRST 156
>Os03g0250200 TB2/DP1 and HVA22 related protein family protein
Length = 250
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 92/142 (64%), Gaps = 4/142 (2%)
Query: 1 MLGELISKVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIACESF---- 56
M+G +S+VLL+ FGYA PA+EC+KT+E + L FWCQYWI+V+++ E F
Sbjct: 1 MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT 60
Query: 57 VSWMPMYGEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQRLEHLRANSGQLI 116
+SW+P Y E KL FF+YLWYPKTKG+ +Y +F RP + Q+E I++ L LRA + ++
Sbjct: 61 ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV 120
Query: 117 AFYIKNFADKGTAFFMDFLRYV 138
Y + A G F D L+YV
Sbjct: 121 VLYFQKAATVGQNTFFDVLKYV 142
>Os03g0132300 TB2/DP1 and HVA22 related protein family protein
Length = 288
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 10/155 (6%)
Query: 1 MLGELISKVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIA----CESF 56
M G I+ L+++ GYA PA++C+KT+E + LRFWCQYWI+++++ ++F
Sbjct: 1 MAGSFITGALMLILGYAYPAYDCYKTVELNKPEIEKLRFWCQYWILLAVLTVFDRVGDNF 60
Query: 57 VSWMPMYGEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQRLEHLRANSGQLI 116
VSW+PMY E KLAF V+LWYPKT G+ VY+SF +P + +YE +I+ L LR + +
Sbjct: 61 VSWLPMYSEAKLAFVVFLWYPKTLGTAYVYESFFKPWIAKYEADIDHNLLELRTRACDMA 120
Query: 117 AFYIKNFADKGTAFFMDFLRYVVSE------RPEA 145
Y + ++ G + L+YV S+ RP+A
Sbjct: 121 VLYFQKVSNYGQTRLYEILQYVASQSQTQTSRPQA 155
>Os09g0533800
Length = 188
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 92/141 (65%), Gaps = 4/141 (2%)
Query: 5 LISKVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIACESF----VSWM 60
LI+++L ++ GYA PA++C+KTLE LRFWCQYWI+++ + E+ VSW+
Sbjct: 5 LITRLLTLVLGYAYPAYDCYKTLELNKPQIDQLRFWCQYWILLAFLTTLETITYFTVSWL 64
Query: 61 PMYGEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQRLEHLRANSGQLIAFYI 120
PMYGE KLA +YLWYPKT+G+ VY+S+++P + ++E +I++ L LRA++ A ++
Sbjct: 65 PMYGEAKLALVLYLWYPKTRGAKHVYESYLQPVLARHEADIDRGLLQLRASAKDATASHL 124
Query: 121 KNFADKGTAFFMDFLRYVVSE 141
+ G A F + V S+
Sbjct: 125 QAAVSLGRACFAEVAGRVSSQ 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.139 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,357,850
Number of extensions: 213855
Number of successful extensions: 489
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 7
Length of query: 217
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 120
Effective length of database: 11,971,043
Effective search space: 1436525160
Effective search space used: 1436525160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)