Os04g0415200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TB2/DP1 and HVA22 related protein family protein.
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Os04g0415200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TB2/DP1 and HVA22 related protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.03 | 0.29 | 10.1 | -1.09 | 0.34 | 0.728 | -0.0349 | -2.32 | -0.0663 | 13.3 | 26.05 | 1241 | -- | -- |
| 39.34 | 0.292 | 10 | -0.526 | 0.34 | 0.495 | 0.0614 | -- | 0.0726 | 13.4 | 26.48 | 1211 | -- | -- |
| 38.02 | 0.287 | 10.1 | -1.11 | 0.337 | 0.739 | -- | -2.4 | -0.0684 | 13.3 | 26.18 | 1246 | -- | -- |
| 39.35 | 0.292 | 9.99 | -0.518 | 0.338 | 0.489 | -- | -- | 0.0788 | 13.3 | 26.63 | 1199 | -- | -- |
| 43.59 | 0.308 | 10.1 | -1.19 | -- | 0.743 | -- | -2.86 | -0.0938 | -- | 26.07 | 1630 | -- | -- |
| 48.66 | 0.327 | 9.99 | -0.37 | 0.251 | -- | -0.0724 | -- | 0.0891 | 13.5 | -- | -- | -- | -- |
| 48.68 | 0.327 | 9.99 | -0.373 | 0.251 | -- | -- | -- | 0.0886 | 13.4 | -- | -- | -- | -- |
| 43.95 | 0.31 | 10 | -0.496 | -- | 0.595 | -- | -- | -0.0108 | -- | 21.2 | 1583 | -- | -- |
| 45.9 | 0.316 | 9.98 | -- | 0.342 | 0.398 | -- | -- | 0.148 | 13.4 | 27.2 | 1192 | -- | -- |
| 52.55 | 0.339 | 10 | -0.382 | -- | -- | -- | -- | 0.0833 | -- | -- | -- | -- | -- |
| 52.34 | 0.338 | 9.98 | -- | 0.257 | -- | -- | -- | 0.13 | 13.5 | -- | -- | -- | -- |
| 50.19 | 0.331 | 10 | -- | -- | 0.497 | -- | -- | 0.0577 | -- | 21.2 | 1583 | -- | -- |
| 56.4 | 0.351 | 9.99 | -- | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 130 | 38.15 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 135 | 38.17 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 142 | 38.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 159 | 38.23 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 163 | 38.24 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 169 | 38.25 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 171 | 38.26 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 176 | 38.27 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 177 | 38.27 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 187 | 38.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 189 | 38.30 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 190 | 38.30 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 191 | 38.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 197 | 38.31 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 217 | 38.35 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 235 | 38.37 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 278 | 38.45 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 293 | 38.46 | humidity | 90 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 347 | 38.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 356 | 38.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 362 | 38.55 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 399 | 38.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 438 | 38.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 441 | 38.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 446 | 38.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 472 | 38.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 20 |
| 478 | 38.69 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 498 | 38.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 520 | 38.74 | wind | 5 | 43200 | > th | dose independent | sin | 16 | NA |
| 534 | 38.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 548 | 38.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 549 | 38.76 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 567 | 38.77 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 576 | 38.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 578 | 38.78 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 609 | 38.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 626 | 38.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 646 | 38.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 650 | 38.82 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 677 | 38.83 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 682 | 38.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 697 | 38.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 710 | 38.85 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 10 |
| 711 | 38.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 11 |
| 728 | 38.86 | wind | 5 | 43200 | < th | dose independent | sin | 16 | NA |
| 744 | 38.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 746 | 38.87 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 747 | 38.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 781 | 38.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 798 | 38.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 833 | 38.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 945 | 38.99 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 970 | 38.99 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 978 | 38.99 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 22 |