BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0415200 Os04g0415200|AK108378
         (192 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36020.1  | chr2:15123424-15125140 REVERSE LENGTH=259          123   6e-29
AT1G75700.1  | chr1:28423956-28424931 FORWARD LENGTH=178          122   8e-29
AT5G42560.1  | chr5:17015573-17016969 FORWARD LENGTH=297          122   1e-28
AT1G19950.1  | chr1:6925043-6926527 FORWARD LENGTH=316            121   2e-28
AT4G36720.1  | chr4:17307769-17309668 FORWARD LENGTH=201           50   5e-07

>AT2G36020.1 | chr2:15123424-15125140 REVERSE LENGTH=259
          Length = 258

 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 79/139 (56%)

Query: 4   EFLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVLTSK 63
           +F+ + L  + GY  PA ECFK +E+     + LRFWCQYW                 S 
Sbjct: 4   DFIIRLLVLILGYTYPAFECFKTVEKNKVDIEELRFWCQYWILLALISSFERVGDFFISW 63

Query: 64  IPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDILIFY 123
           +P+Y E+++ F VYLWYP+T+GT  VY+T L+P + Q++  I+ ++  LRA A D  IFY
Sbjct: 64  LPLYGEMKVVFFVYLWYPKTKGTRHVYETLLKPYMAQHETEIDRKIMELRARAWDFFIFY 123

Query: 124 LKNFTDRGYDLFLRGMEYI 142
             NF   G    ++G +Y+
Sbjct: 124 FNNFAQAGQSTLIQGFQYV 142



>AT1G75700.1 | chr1:28423956-28424931 FORWARD LENGTH=178
          Length = 177

 Score =  122 bits (307), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 80/138 (57%)

Query: 5   FLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVLTSKI 64
           FLT+ L  +FGYA PA ECFK +E        L+FWCQYW               L S +
Sbjct: 5   FLTRGLLMVFGYAYPAYECFKTVELNKPEIQQLQFWCQYWIIVAALTIFERIGDALVSWL 64

Query: 65  PMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDILIFYL 124
           PMYSE +LAF +YLW+P+T+GT  VYD+F RP + +++  I+  L  ++  A D+ + YL
Sbjct: 65  PMYSEAKLAFFIYLWFPKTKGTTYVYDSFFRPYIAKHENEIDRNLVKVKTRAKDMAMIYL 124

Query: 125 KNFTDRGYDLFLRGMEYI 142
           +   ++G   F   ++YI
Sbjct: 125 QKAINQGQTKFFEILQYI 142



>AT5G42560.1 | chr5:17015573-17016969 FORWARD LENGTH=297
          Length = 296

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 79/138 (57%)

Query: 5   FLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVLTSKI 64
           FLT+ L  + GYA PA EC+K +E+     + LRFWCQYW                 S +
Sbjct: 5   FLTRGLVMVLGYAYPAYECYKTVEKNRPEIEQLRFWCQYWILVACLTVFERVGDAFVSWV 64

Query: 65  PMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDILIFYL 124
           PMYSE +LAF +YLWYP+TRGT  VY++F RP + Q++ +I+  L  LR  AGD+ + Y 
Sbjct: 65  PMYSEAKLAFFIYLWYPKTRGTTYVYESFFRPYLSQHENDIDHSLLELRTRAGDMAVIYW 124

Query: 125 KNFTDRGYDLFLRGMEYI 142
           +     G    L  ++Y+
Sbjct: 125 QRVASYGQTRILEILQYV 142



>AT1G19950.1 | chr1:6925043-6926527 FORWARD LENGTH=316
          Length = 315

 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 78/138 (56%)

Query: 5   FLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVLTSKI 64
           FLT+ L  +FGYA PA EC+KA+E+       LRFWCQYW               L S +
Sbjct: 5   FLTRGLVMVFGYAYPAYECYKAVEKNKPEMQQLRFWCQYWILVAALTIFERVGDALASWV 64

Query: 65  PMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDILIFYL 124
           P+Y E +LAF +YLW+P+TRGT  VYD+F +P V +++  I+  L  LR  AGD+ + Y 
Sbjct: 65  PLYCEAKLAFFIYLWFPKTRGTTYVYDSFFQPYVAKHENEIDRSLIELRTKAGDLAVIYC 124

Query: 125 KNFTDRGYDLFLRGMEYI 142
           +     G    +  + ++
Sbjct: 125 RKAVSYGQTRIVEILHFV 142



>AT4G36720.1 | chr4:17307769-17309668 FORWARD LENGTH=201
          Length = 200

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 1   MSVEFLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVL 60
           +S   + +      G  +P    FKAIE   G  +  +    YW               +
Sbjct: 31  LSSNIVLRTACCSIGIGLPVYSTFKAIES--GDENEQQKMLIYWAAYGSFSLVEVFTDKI 88

Query: 61  TSKIPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIE--------ERLRYL 112
            S  P+Y  ++ AFLV+L  P   G+  +Y+  +RP ++++Q  ++        E ++ +
Sbjct: 89  ISWFPLYYHVKFAFLVWLQLPTVEGSKQIYNNQIRPFLLRHQARVDQLVDGVYGEMVKVV 148

Query: 113 RANAGDI 119
           R++ G+I
Sbjct: 149 RSHQGEI 155



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.144    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,551,859
Number of extensions: 122388
Number of successful extensions: 262
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 5
Length of query: 192
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 99
Effective length of database: 8,556,881
Effective search space: 847131219
Effective search space used: 847131219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)