BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0415200 Os04g0415200|AK108378
(192 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0415200 TB2/DP1 and HVA22 related protein family protein 339 6e-94
Os11g0156600 TB2/DP1 and HVA22 related protein family protein 166 7e-42
Os12g0158600 TB2/DP1 and HVA22 related protein family protein 161 3e-40
Os03g0250200 TB2/DP1 and HVA22 related protein family protein 113 6e-26
Os03g0132300 TB2/DP1 and HVA22 related protein family protein 112 1e-25
Os10g0177400 TB2/DP1 and HVA22 related protein family protein 111 3e-25
Os09g0533800 107 5e-24
>Os04g0415200 TB2/DP1 and HVA22 related protein family protein
Length = 192
Score = 339 bits (870), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 168/192 (87%), Positives = 168/192 (87%)
Query: 1 MSVEFLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVL 60
MSVEFLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYW AGVL
Sbjct: 1 MSVEFLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWIILVILVIFDDIAGVL 60
Query: 61 TSKIPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDIL 120
TSKIPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDIL
Sbjct: 61 TSKIPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDIL 120
Query: 121 IFYLKNFTDRGYDLFLRGMEYIXXXXXXXXXXXXWFSFGGDRAERSSYVDDYVAGGGDRR 180
IFYLKNFTDRGYDLFLRGMEYI WFSFGGDRAERSSYVDDYVAGGGDRR
Sbjct: 121 IFYLKNFTDRGYDLFLRGMEYIRSQTSRGSRTRRWFSFGGDRAERSSYVDDYVAGGGDRR 180
Query: 181 STARHRRPRDDY 192
STARHRRPRDDY
Sbjct: 181 STARHRRPRDDY 192
>Os11g0156600 TB2/DP1 and HVA22 related protein family protein
Length = 217
Score = 166 bits (421), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 96/139 (69%), Gaps = 4/139 (2%)
Query: 4 EFLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVLTSK 63
E ++K L LFGYAMPA ECFK +E RP LRFWCQYW S
Sbjct: 4 ELISKVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIACES----FVSW 59
Query: 64 IPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDILIFY 123
+PMY E++LAF VYLWYP+T+G+D+VYD+F+RP VMQY+PNIE+RL +LRAN+G ++ FY
Sbjct: 60 MPMYGEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQRLEHLRANSGQLIAFY 119
Query: 124 LKNFTDRGYDLFLRGMEYI 142
+KNF D+G F+ + Y+
Sbjct: 120 IKNFADKGTAFFMDFLRYV 138
>Os12g0158600 TB2/DP1 and HVA22 related protein family protein
Length = 161
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 91/129 (70%), Gaps = 4/129 (3%)
Query: 14 FGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVLTSKIPMYSELRLA 73
FGYAMPA ECFK +E RP LRFWCQYW L S +PMY E++LA
Sbjct: 14 FGYAMPAFECFKTVEARPNDAHMLRFWCQYWIIVAMVIAFES----LISWMPMYGEIKLA 69
Query: 74 FLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDILIFYLKNFTDRGYD 133
F VYLWYP+T+G+D+VYDTFLRP+VMQY+PNIE+RL +LRA +G +L FY+KNF D+G
Sbjct: 70 FFVYLWYPKTKGSDVVYDTFLRPIVMQYEPNIEQRLLHLRAKSGQLLSFYMKNFADKGTA 129
Query: 134 LFLRGMEYI 142
F+ + Y+
Sbjct: 130 FFMDVLRYV 138
>Os03g0250200 TB2/DP1 and HVA22 related protein family protein
Length = 250
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%)
Query: 5 FLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVLTSKI 64
FL++ L FGYA PA EC+K +E + L FWCQYW S +
Sbjct: 5 FLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFTISWL 64
Query: 65 PMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDILIFYL 124
P YSE +L F +YLWYP+T+GT +Y TF RP + Q++ I+ L LRA A D+++ Y
Sbjct: 65 PFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVVVLYF 124
Query: 125 KNFTDRGYDLFLRGMEYI 142
+ G + F ++Y+
Sbjct: 125 QKAATVGQNTFFDVLKYV 142
>Os03g0132300 TB2/DP1 and HVA22 related protein family protein
Length = 288
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%)
Query: 1 MSVEFLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVL 60
M+ F+T AL + GYA PA +C+K +E + LRFWCQYW
Sbjct: 1 MAGSFITGALMLILGYAYPAYDCYKTVELNKPEIEKLRFWCQYWILLAVLTVFDRVGDNF 60
Query: 61 TSKIPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDIL 120
S +PMYSE +LAF+V+LWYP+T GT VY++F +P + +Y+ +I+ L LR A D+
Sbjct: 61 VSWLPMYSEAKLAFVVFLWYPKTLGTAYVYESFFKPWIAKYEADIDHNLLELRTRACDMA 120
Query: 121 IFYLKNFTDRGYDLFLRGMEYI 142
+ Y + ++ G ++Y+
Sbjct: 121 VLYFQKVSNYGQTRLYEILQYV 142
>Os10g0177400 TB2/DP1 and HVA22 related protein family protein
Length = 233
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 77/141 (54%)
Query: 1 MSVEFLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVL 60
M +FL++ L FGYA PA EC+K +E + L FWCQYW
Sbjct: 1 MMGDFLSRVLLLAFGYAYPAYECYKTVELNKPEIEKLIFWCQYWILVALLTVLERFGDFA 60
Query: 61 TSKIPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDIL 120
S +P+YSE +L F +YLW P+T+GT VY+TF RP + QY+ +I+ + LR AGD+L
Sbjct: 61 ISWLPLYSEAKLMFFIYLWCPRTKGTSYVYETFFRPYISQYENDIDCSILDLRVRAGDML 120
Query: 121 IFYLKNFTDRGYDLFLRGMEY 141
+ Y + G F ++Y
Sbjct: 121 VVYWQKVAIIGQTTFFNILKY 141
>Os09g0533800
Length = 188
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 78/135 (57%)
Query: 1 MSVEFLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWXXXXXXXXXXXXAGVL 60
M+V +T+ LT + GYA PA +C+K +E + D LRFWCQYW
Sbjct: 1 MAVLLITRLLTLVLGYAYPAYDCYKTLELNKPQIDQLRFWCQYWILLAFLTTLETITYFT 60
Query: 61 TSKIPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDIL 120
S +PMY E +LA ++YLWYP+TRG VY+++L+P++ +++ +I+ L LRA+A D
Sbjct: 61 VSWLPMYGEAKLALVLYLWYPKTRGAKHVYESYLQPVLARHEADIDRGLLQLRASAKDAT 120
Query: 121 IFYLKNFTDRGYDLF 135
+L+ G F
Sbjct: 121 ASHLQAAVSLGRACF 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.144 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,774,801
Number of extensions: 197496
Number of successful extensions: 590
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 7
Length of query: 192
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 97
Effective length of database: 12,075,471
Effective search space: 1171320687
Effective search space used: 1171320687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)