FiT-DB / Search/ Help/ Sample detail

Os12g0158600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TB2/DP1 and HVA22 related protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.31 (0.0359) R2 : 0.523
β1 : -2.26 (0.138) R2dD : 0.332 R2D : 0.165
β2 : 1.17 (0.0896) R2dC : 0.185 R2C : 0.218
β3 : 1.52 (0.164) R2dE : 0.117 R2E : 0.0227
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.39 (0.0807) R2dN8 : 0.0377 R2N8 : -0.0451
σ : 0.66
deviance : 200.65
__
_____
C
peak time of C : 3.13
E
wheather : temperature
threshold : 10.89
memory length : 1211
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
194.89 0.656 6.38 -2.79 1.21 1.5 0.732 -2.46 -0.53 2.87 14.9 1337 -- --
199.95 0.659 6.31 -2.27 1.18 1.51 0.677 -- -0.391 2.85 11.5 1292 -- --
196.63 0.653 6.37 -2.77 1.21 1.51 -- -2.26 -0.526 2.94 14.8 1342 -- --
200.65 0.66 6.31 -2.26 1.17 1.52 -- -- -0.39 3.13 10.89 1211 -- --
270.99 0.767 6.35 -2.71 -- 1.89 -- -1.93 -0.525 -- 15.13 1132 -- --
236.9 0.722 6.25 -1.79 1.32 -- 0.614 -- -0.118 2.83 -- -- -- --
238.17 0.723 6.25 -1.8 1.33 -- -- -- -0.121 2.89 -- -- -- --
273.38 0.77 6.32 -2.34 -- 1.99 -- -- -0.436 -- 13.28 1133 -- --
316.61 0.829 6.22 -- 1.4 0.744 -- -- -0.0128 3.35 12.97 513 -- --
339.64 0.861 6.24 -1.75 -- -- -- -- -0.0872 -- -- -- -- --
323.76 0.842 6.2 -- 1.29 -- -- -- 0.0793 2.88 -- -- -- --
399.53 0.931 6.23 -- -- 0.923 -- -- -0.0407 -- 16.9 1111 -- --
420.01 0.957 6.2 -- -- -- -- -- 0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 187.56 temperature 15 270 > th dose dependent rect. 1 20
6 188.82 temperature 15 270 > th dose dependent rect. 3 17
13 189.47 wind 9 43200 > th dose dependent rect. 18 12
21 190.20 wind 9 43200 > th dose independent rect. 18 13
24 190.47 wind 9 43200 > th dose independent rect. 18 11
28 190.56 wind 9 43200 < th dose independent rect. 18 6
31 190.68 wind 9 43200 > th dose independent rect. 18 6
36 190.89 wind 9 43200 > th dose dependent rect. 18 6
43 191.12 wind 9 43200 < th dose independent rect. 18 13
51 191.48 wind 9 43200 < th dose independent rect. 18 9
72 192.29 wind 9 43200 > th dose dependent sin 13 NA
79 193.14 temperature 10 30 > th dose dependent rect. 3 23
85 193.48 temperature 10 720 > th dose dependent rect. 19 20
86 193.49 temperature 10 1440 > th dose dependent rect. 17 16
90 193.52 temperature 10 270 > th dose dependent rect. 12 23
92 193.60 wind 9 43200 < th dose independent rect. 18 4
112 193.82 temperature 15 1440 > th dose dependent rect. 17 11
116 193.83 temperature 30 1440 < th dose dependent rect. 18 15
134 193.96 wind 9 43200 > th dose independent sin 12 NA
135 193.97 wind 9 43200 > th dose dependent rect. 20 4
149 194.05 temperature 10 1440 > th dose dependent rect. 6 2
156 194.10 temperature 30 1440 < th dose dependent rect. 18 10
157 194.11 temperature 15 1440 > th dose dependent sin 12 NA
167 194.14 wind 7 43200 > th dose independent rect. 20 1
178 194.17 atmosphere 995 43200 < th dose independent rect. 14 1
195 194.22 atmosphere 995 43200 < th dose dependent rect. 15 1
205 194.24 temperature 25 1440 < th dose dependent rect. 1 1
206 194.24 wind 9 43200 > th dose dependent rect. 18 4
215 194.28 temperature 10 1440 > th dose dependent rect. 1 8
224 194.31 temperature 25 1440 < th dose dependent rect. 21 7
232 194.34 temperature 30 1440 < th dose dependent rect. 6 2
259 194.42 temperature 30 1440 < th dose dependent rect. 1 8
266 194.45 temperature 25 1440 < th dose dependent rect. 23 3
285 194.50 temperature 10 1440 > th dose dependent rect. 18 4
308 194.55 temperature 10 1440 > th dose dependent rect. 18 1
334 194.62 temperature 25 1440 < th dose dependent rect. 1 3
344 194.64 radiation 30 4320 < th dose independent rect. 1 7
350 194.66 radiation 30 4320 < th dose independent rect. 22 10
351 194.66 temperature 30 1440 < th dose dependent sin 11 NA
369 194.70 radiation 30 4320 < th dose independent rect. 7 1
389 194.74 temperature 30 1440 < th dose dependent rect. 18 4
405 194.77 radiation 30 4320 < th dose independent rect. 3 5
449 194.86 wind 7 43200 < th dose independent rect. 20 1
475 194.91 temperature 25 1440 < th dose dependent rect. 3 1
527 195.01 wind 9 43200 < th dose independent sin 12 NA
533 195.02 temperature 30 1440 < th dose dependent rect. 18 1
557 195.08 atmosphere 995 43200 < th dose dependent rect. 14 8
576 195.13 wind 7 43200 > th dose dependent rect. 20 1
628 195.23 atmosphere 995 43200 > th dose independent rect. 14 1
639 195.25 wind 9 43200 > th dose independent rect. 20 5
719 195.38 temperature 15 1440 > th dose dependent no NA NA
740 195.40 temperature 15 1440 > th dose dependent rect. 20 23
742 195.41 temperature 15 1440 > th dose dependent rect. 5 23
744 195.42 temperature 20 90 > th dose independent rect. 3 18
756 195.43 temperature 15 1440 > th dose dependent rect. 23 23
875 195.61 wind 9 43200 > th dose dependent rect. 14 18