Os03g0132300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TB2/DP1 and HVA22 related protein family protein.
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Os03g0132300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TB2/DP1 and HVA22 related protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.75 | 0.311 | 8.08 | 0.243 | 0.432 | 0.736 | 0.796 | -1.25 | 0.181 | 22 | 0.8501 | 89 | -- | -- |
| 47.23 | 0.32 | 8.08 | 0.101 | 0.374 | 0.813 | -0.26 | -- | 0.127 | 21.5 | 0.58 | 90 | -- | -- |
| 44.42 | 0.31 | 8.08 | 0.211 | 0.431 | 0.74 | -- | -0.689 | 0.172 | 21.9 | 0.5899 | 92 | -- | -- |
| 47.17 | 0.32 | 8.08 | 0.224 | 0.438 | 0.729 | -- | -- | 0.178 | 21.9 | 0.21 | 90 | -- | -- |
| 49.09 | 0.326 | 8.07 | 0.177 | -- | 0.983 | -- | -0.667 | 0.169 | -- | 1.048 | 72 | -- | -- |
| 52.48 | 0.34 | 8.11 | 0.121 | 1.23 | -- | -0.672 | -- | 0.113 | 23.7 | -- | -- | -- | -- |
| 54.44 | 0.346 | 8.11 | 0.148 | 1.24 | -- | -- | -- | 0.117 | 23.6 | -- | -- | -- | -- |
| 52.1 | 0.336 | 8.07 | 0.213 | -- | 0.981 | -- | -- | 0.163 | -- | 0.5656 | 69 | -- | -- |
| 48.3 | 0.324 | 8.08 | -- | 0.447 | 0.738 | -- | -- | 0.169 | 21.9 | 0.4899 | 86 | -- | -- |
| 150.31 | 0.573 | 8.08 | 0.183 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 55.02 | 0.347 | 8.11 | -- | 1.24 | -- | -- | -- | 0.1 | 23.6 | -- | -- | -- | -- |
| 53.27 | 0.34 | 8.08 | -- | -- | 0.977 | -- | -- | 0.143 | -- | 0.8075 | 67 | -- | -- |
| 151.19 | 0.574 | 8.08 | -- | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.34 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 5 | 42.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 13 |
| 10 | 43.01 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 12 | 43.12 | temperature | 20.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 13 | 43.17 | temperature | 20.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 17 | 43.32 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 20 | 43.51 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 24 | 4 |
| 33 | 43.71 | temperature | 20.0 | 90 | > th | dose independent | rect. | 24 | 5 |
| 34 | 43.71 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 37 | 43.73 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 38 | 43.74 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 40 | 43.75 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 51 | 43.78 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 22 |
| 53 | 43.79 | radiation | 1.0 | 90 | < th | dose dependent | no | NA | NA |
| 55 | 43.80 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 64 | 43.84 | temperature | 20.0 | 90 | > th | dose independent | rect. | 11 | 18 |
| 70 | 43.86 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 11 |
| 74 | 43.88 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 2 |
| 75 | 43.90 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 88 | 43.99 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 15 |
| 91 | 44.00 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 13 |
| 117 | 44.19 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 15 |
| 123 | 44.22 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 5 |
| 124 | 44.22 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 14 |
| 127 | 44.23 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 11 |
| 132 | 44.24 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 13 |
| 136 | 44.26 | radiation | 1.0 | 90 | < th | dose independent | rect. | 11 | 20 |
| 143 | 44.27 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 149 | 44.30 | radiation | 1.0 | 30 | < th | dose independent | sin | 5 | NA |
| 150 | 44.30 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 13 |
| 152 | 44.31 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 14 |
| 169 | 44.34 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 11 | 18 |
| 178 | 44.36 | radiation | 1.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 182 | 44.37 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 23 |
| 196 | 44.42 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 197 | 44.43 | radiation | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 198 | 44.43 | radiation | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 253 | 44.45 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 255 | 44.45 | radiation | 1.0 | 30 | < th | dose dependent | sin | 4 | NA |
| 261 | 44.47 | radiation | 1.0 | 90 | < th | dose dependent | sin | 9 | NA |
| 262 | 44.47 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 11 |
| 270 | 44.48 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 279 | 44.50 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 13 |
| 289 | 44.51 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 7 |
| 300 | 44.52 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 5 |
| 309 | 44.55 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 313 | 44.56 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 13 |
| 317 | 44.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 11 |
| 319 | 44.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 13 |
| 325 | 44.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 11 |
| 340 | 44.59 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 348 | 44.62 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 384 | 44.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 11 |
| 386 | 44.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 11 |
| 420 | 44.77 | radiation | 1.0 | 90 | > th | dose independent | rect. | 13 | 23 |
| 425 | 44.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 444 | 44.85 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 1 | 4 |
| 454 | 44.88 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 455 | 44.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 13 |
| 457 | 44.89 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 458 | 44.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 13 |
| 481 | 44.93 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 4 |
| 482 | 44.93 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 17 |
| 487 | 44.94 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 19 |
| 491 | 44.94 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 518 | 44.98 | radiation | 1.0 | 30 | > th | dose independent | sin | 7 | NA |
| 534 | 45.00 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 1 | 4 |
| 536 | 45.00 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 560 | 45.03 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 20 |
| 592 | 45.08 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 11 |
| 596 | 45.09 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 20 |
| 613 | 45.11 | humidity | 80.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 645 | 45.16 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 4 |
| 646 | 45.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 650 | 45.17 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 12 |
| 663 | 45.19 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 17 |
| 698 | 45.24 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 748 | 45.31 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 749 | 45.32 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 2 |
| 766 | 45.34 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 776 | 45.36 | temperature | 10.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 778 | 45.36 | temperature | 30.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 779 | 45.36 | humidity | 50.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 782 | 45.36 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 783 | 45.36 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 792 | 45.36 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 20 |
| 800 | 45.37 | wind | 9.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 805 | 45.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 22 |
| 811 | 45.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 812 | 45.39 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 2 |
| 815 | 45.39 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 845 | 45.41 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 20 |
| 849 | 45.41 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 20 |
| 900 | 45.45 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 912 | 45.47 | wind | 7.0 | 720 | < th | dose independent | rect. | 20 | 5 |
| 917 | 45.47 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 929 | 45.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 11 |
| 931 | 45.50 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 14 |
| 933 | 45.50 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 939 | 45.51 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 24 | 2 |
| 947 | 45.52 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 2 |
| 955 | 45.53 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 1 | 4 |
| 960 | 45.53 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 1 | 4 |
| 981 | 45.55 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 2 |
| 982 | 45.55 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 2 |
| 985 | 45.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 2 |
| 986 | 45.55 | radiation | 1.0 | 270 | < th | dose independent | rect. | 24 | 2 |
| 991 | 45.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 2 |
| 993 | 45.55 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 22 |
| 995 | 45.55 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 24 | 2 |
| 1000 | 45.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 2 |