BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0132300 Os03g0132300|AK065483
(288 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G42560.1 | chr5:17015573-17016969 FORWARD LENGTH=297 250 7e-67
AT1G75700.1 | chr1:28423956-28424931 FORWARD LENGTH=178 226 1e-59
AT1G19950.1 | chr1:6925043-6926527 FORWARD LENGTH=316 222 2e-58
AT2G36020.1 | chr2:15123424-15125140 REVERSE LENGTH=259 188 2e-48
AT4G36720.1 | chr4:17307769-17309668 FORWARD LENGTH=201 55 4e-08
AT1G74520.1 | chr1:28008109-28009156 REVERSE LENGTH=178 52 4e-07
AT2G42820.1 | chr2:17817460-17818301 REVERSE LENGTH=159 49 2e-06
>AT5G42560.1 | chr5:17015573-17016969 FORWARD LENGTH=297
Length = 296
Score = 250 bits (638), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 108/146 (73%), Positives = 134/146 (91%)
Query: 1 MAGSFITGALMLILGYAYPAYDCYKTVELNKPEIEKLRFWCQYWILLAVLTVFDRVGDNF 60
M GSF+T L+++LGYAYPAY+CYKTVE N+PEIE+LRFWCQYWIL+A LTVF+RVGD F
Sbjct: 1 MIGSFLTRGLVMVLGYAYPAYECYKTVEKNRPEIEQLRFWCQYWILVACLTVFERVGDAF 60
Query: 61 VSWLPMYSEAKLAFVVFLWYPKTLGTAYVYESFFKPWIAKYEADIDHNLLELRTRACDMA 120
VSW+PMYSEAKLAF ++LWYPKT GT YVYESFF+P+++++E DIDH+LLELRTRA DMA
Sbjct: 61 VSWVPMYSEAKLAFFIYLWYPKTRGTTYVYESFFRPYLSQHENDIDHSLLELRTRAGDMA 120
Query: 121 VLYFQKVSNYGQTRLYEILQYVASQS 146
V+Y+Q+V++YGQTR+ EILQYVA+QS
Sbjct: 121 VIYWQRVASYGQTRILEILQYVAAQS 146
>AT1G75700.1 | chr1:28423956-28424931 FORWARD LENGTH=178
Length = 177
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 95/146 (65%), Positives = 126/146 (86%)
Query: 1 MAGSFITGALMLILGYAYPAYDCYKTVELNKPEIEKLRFWCQYWILLAVLTVFDRVGDNF 60
M GSF+T L+++ GYAYPAY+C+KTVELNKPEI++L+FWCQYWI++A LT+F+R+GD
Sbjct: 1 MIGSFLTRGLLMVFGYAYPAYECFKTVELNKPEIQQLQFWCQYWIIVAALTIFERIGDAL 60
Query: 61 VSWLPMYSEAKLAFVVFLWYPKTLGTAYVYESFFKPWIAKYEADIDHNLLELRTRACDMA 120
VSWLPMYSEAKLAF ++LW+PKT GT YVY+SFF+P+IAK+E +ID NL++++TRA DMA
Sbjct: 61 VSWLPMYSEAKLAFFIYLWFPKTKGTTYVYDSFFRPYIAKHENEIDRNLVKVKTRAKDMA 120
Query: 121 VLYFQKVSNYGQTRLYEILQYVASQS 146
++Y QK N GQT+ +EILQY+ QS
Sbjct: 121 MIYLQKAINQGQTKFFEILQYITEQS 146
>AT1G19950.1 | chr1:6925043-6926527 FORWARD LENGTH=316
Length = 315
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 92/146 (63%), Positives = 123/146 (84%)
Query: 1 MAGSFITGALMLILGYAYPAYDCYKTVELNKPEIEKLRFWCQYWILLAVLTVFDRVGDNF 60
M GSF+T L+++ GYAYPAY+CYK VE NKPE+++LRFWCQYWIL+A LT+F+RVGD
Sbjct: 1 MIGSFLTRGLVMVFGYAYPAYECYKAVEKNKPEMQQLRFWCQYWILVAALTIFERVGDAL 60
Query: 61 VSWLPMYSEAKLAFVVFLWYPKTLGTAYVYESFFKPWIAKYEADIDHNLLELRTRACDMA 120
SW+P+Y EAKLAF ++LW+PKT GT YVY+SFF+P++AK+E +ID +L+ELRT+A D+A
Sbjct: 61 ASWVPLYCEAKLAFFIYLWFPKTRGTTYVYDSFFQPYVAKHENEIDRSLIELRTKAGDLA 120
Query: 121 VLYFQKVSNYGQTRLYEILQYVASQS 146
V+Y +K +YGQTR+ EIL +VA QS
Sbjct: 121 VIYCRKAVSYGQTRIVEILHFVALQS 146
>AT2G36020.1 | chr2:15123424-15125140 REVERSE LENGTH=259
Length = 258
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 110/146 (75%)
Query: 1 MAGSFITGALMLILGYAYPAYDCYKTVELNKPEIEKLRFWCQYWILLAVLTVFDRVGDNF 60
M G FI L+LILGY YPA++C+KTVE NK +IE+LRFWCQYWILLA+++ F+RVGD F
Sbjct: 1 MLGDFIIRLLVLILGYTYPAFECFKTVEKNKVDIEELRFWCQYWILLALISSFERVGDFF 60
Query: 61 VSWLPMYSEAKLAFVVFLWYPKTLGTAYVYESFFKPWIAKYEADIDHNLLELRTRACDMA 120
+SWLP+Y E K+ F V+LWYPKT GT +VYE+ KP++A++E +ID ++ELR RA D
Sbjct: 61 ISWLPLYGEMKVVFFVYLWYPKTKGTRHVYETLLKPYMAQHETEIDRKIMELRARAWDFF 120
Query: 121 VLYFQKVSNYGQTRLYEILQYVASQS 146
+ YF + GQ+ L + QYV +QS
Sbjct: 121 IFYFNNFAQAGQSTLIQGFQYVLAQS 146
>AT4G36720.1 | chr4:17307769-17309668 FORWARD LENGTH=201
Length = 200
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 14 LGYAYPAYDCYKTVELNKPEIEKLRFWCQYWILLAVLTVFDRVGDNFVSWLPMYSEAKLA 73
+G P Y +K +E + E E+ + YW ++ + D +SW P+Y K A
Sbjct: 44 IGIGLPVYSTFKAIE-SGDENEQQKMLI-YWAAYGSFSLVEVFTDKIISWFPLYYHVKFA 101
Query: 74 FVVFLWYPKTLGTAYVYESFFKPWIAKYEADIDH 107
F+V+L P G+ +Y + +P++ +++A +D
Sbjct: 102 FLVWLQLPTVEGSKQIYNNQIRPFLLRHQARVDQ 135
>AT1G74520.1 | chr1:28008109-28009156 REVERSE LENGTH=178
Length = 177
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 13 ILGYAYPAYDCYKTVELNKPEIEKLRFWCQYWILLAVLTVFDRVGDNFVSWLPMYSEAKL 72
++ YP Y + +E +K W YW+L ++LT+ + + WLP++S KL
Sbjct: 23 VVSLVYPLYASVQAIETQSHADDKQ--WLTYWVLYSLLTLIELTFAKLIEWLPIWSYMKL 80
Query: 73 AFVVFLWYPKTLGTAYVYESFFKP 96
+L P G AYVYE F +P
Sbjct: 81 ILTCWLVIPYFSGAAYVYEHFVRP 104
>AT2G42820.1 | chr2:17817460-17818301 REVERSE LENGTH=159
Length = 158
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 18 YPAYDCYKTVELNKPEIEKLRFWCQYWILLAVLTVFDRVGDNFVSWLPMYSEAKLAFVVF 77
YP Y ++ +E P + + W YWI+ +++T+F+ ++WLP + KL F ++
Sbjct: 23 YPLYASFRAIE--SPTMLDDQQWLTYWIIYSLITIFELSVWRVLAWLPFWPYLKLLFCMW 80
Query: 78 LWYPKTLGTAYVYESFFKPWI 98
L P G AY+Y +F + ++
Sbjct: 81 LVLPMFSGAAYIYSNFVRQYV 101
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,303,255
Number of extensions: 142637
Number of successful extensions: 321
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 10
Length of query: 288
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 190
Effective length of database: 8,419,801
Effective search space: 1599762190
Effective search space used: 1599762190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)