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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0177400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TB2/DP1 and HVA22 related protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.02 (0.0345) R2 : 0.506
β1 : 1.57 (0.13) R2dD : 0.181 R2D : 0.0473
β2 : 1.38 (0.0868) R2dC : 0.276 R2C : 0.255
β3 : 1.72 (0.183) R2dE : 0.114 R2E : -0.00753
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.696 (0.0768) R2dN8 : 0.131 R2N8 : -0.0173
σ : 0.634
deviance : 185.56
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_____
C
peak time of C : 19.8
E
wheather : radiation
threshold : 2.171
memory length : 1445
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.77 0.618 4.09 1.12 1.4 2.74 0.825 5.03 0.597 20 0.9787 1438 -- --
184.03 0.632 4.01 1.57 1.37 1.83 0.586 -- 0.685 19.6 2.114 1452 -- --
174.57 0.615 4.09 1.12 1.37 2.74 -- 4.94 0.6 19.9 0.9716 1445 -- --
185.56 0.634 4.02 1.57 1.38 1.72 -- -- 0.696 19.8 2.171 1445 -- --
264.36 0.757 4.05 1.07 -- 2.84 -- 5.01 0.567 -- 1.17 1485 -- --
220.12 0.696 4.07 1.24 1.42 -- 0.757 -- 0.449 19.8 -- -- -- --
221.78 0.697 4.07 1.22 1.42 -- -- -- 0.45 19.9 -- -- -- --
276.54 0.775 3.97 1.59 -- 2.16 -- -- 0.712 -- 2.29 1502 -- --
245.64 0.73 4.05 -- 1.31 1.28 -- -- 0.492 19.2 3.211 1530 -- --
330.45 0.849 4.03 1.2 -- -- -- -- 0.431 -- -- -- -- --
261.04 0.756 4.1 -- 1.41 -- -- -- 0.314 19.9 -- -- -- --
336.86 0.855 4.02 -- -- 1.55 -- -- 0.492 -- 3.042 1516 -- --
368.7 0.896 4.06 -- -- -- -- -- 0.297 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 167.81 radiation 1 1440 < th dose dependent rect. 18 23
2 168.68 radiation 1 1440 < th dose dependent rect. 22 19
3 168.71 radiation 1 1440 < th dose dependent rect. 24 17
6 168.75 radiation 1 1440 < th dose dependent rect. 5 12
10 168.83 radiation 1 1440 < th dose dependent rect. 2 15
14 170.95 radiation 1 1440 < th dose dependent sin 2 NA
16 171.13 humidity 80 43200 > th dose independent rect. 13 1
17 171.30 radiation 1 14400 < th dose dependent rect. 22 7
18 171.42 radiation 1 14400 < th dose dependent rect. 19 10
25 172.31 humidity 80 43200 < th dose independent rect. 13 2
34 172.68 radiation 1 1440 < th dose dependent rect. 5 20
35 172.69 radiation 1 1440 < th dose dependent rect. 5 22
37 172.73 radiation 1 1440 < th dose dependent rect. 5 15
41 172.78 radiation 1 1440 < th dose dependent rect. 5 18
46 172.79 radiation 1 1440 < th dose dependent rect. 22 22
48 172.80 radiation 1 1440 < th dose dependent rect. 24 20
50 172.80 radiation 1 1440 < th dose dependent rect. 10 23
61 172.83 radiation 1 1440 < th dose dependent rect. 2 23
69 172.85 radiation 1 1440 < th dose dependent rect. 24 23
70 172.86 radiation 1 1440 < th dose dependent no NA NA
79 172.88 radiation 1 1440 < th dose dependent rect. 2 18
122 173.48 radiation 1 1440 < th dose dependent rect. 7 23
132 173.72 humidity 90 43200 > th dose independent rect. 20 5
133 173.74 humidity 90 43200 < th dose independent rect. 22 3
134 173.75 humidity 90 43200 > th dose independent rect. 22 3
136 173.79 humidity 90 43200 > th dose independent rect. 19 9
138 173.81 humidity 90 43200 > th dose independent rect. 20 7
147 173.91 humidity 90 43200 > th dose independent rect. 20 12
162 174.02 humidity 90 14400 > th dose dependent rect. 5 2
163 174.03 humidity 90 43200 > th dose independent sin 12 NA
177 174.09 humidity 90 43200 < th dose independent rect. 19 8
200 174.21 humidity 80 43200 > th dose dependent rect. 10 1
243 174.39 humidity 90 43200 < th dose independent rect. 19 15
286 174.57 atmosphere 1005 43200 < th dose independent rect. 16 1
288 174.57 humidity 90 14400 > th dose dependent rect. 1 6
293 174.59 humidity 90 43200 > th dose dependent rect. 20 6
297 174.61 humidity 90 43200 < th dose independent sin 13 NA
304 174.62 humidity 90 43200 > th dose dependent rect. 20 1
316 174.69 humidity 90 43200 > th dose dependent rect. 19 8
321 174.70 humidity 90 43200 > th dose dependent rect. 18 11
349 174.76 atmosphere 1005 43200 > th dose independent rect. 16 1
358 174.78 atmosphere 1005 43200 < th dose independent rect. 18 1
364 174.79 humidity 90 43200 > th dose dependent rect. 20 14
366 174.80 humidity 90 43200 > th dose dependent sin 12 NA
421 174.93 atmosphere 1005 43200 > th dose independent rect. 11 8
453 174.99 humidity 90 43200 > th dose independent rect. 9 1
482 175.05 atmosphere 1005 43200 > th dose independent rect. 11 6
489 175.06 atmosphere 1005 43200 > th dose independent rect. 18 1
498 175.07 atmosphere 1005 43200 < th dose independent rect. 11 8
556 175.18 atmosphere 1005 43200 > th dose independent rect. 16 4
583 175.22 humidity 90 43200 > th dose independent rect. 9 21
592 175.24 radiation 1 1440 > th dose independent sin 0 NA
634 175.30 humidity 80 43200 > th dose dependent rect. 9 6
692 175.38 humidity 90 43200 > th dose dependent rect. 8 22
734 175.45 radiation 10 14400 < th dose dependent rect. 18 2
885 175.64 humidity 70 43200 > th dose dependent rect. 14 1
901 175.66 humidity 90 43200 < th dose independent rect. 9 21
903 175.66 humidity 90 43200 > th dose dependent no NA NA
933 175.71 humidity 90 43200 > th dose independent no NA NA
937 175.71 radiation 1 43200 < th dose dependent rect. 4 1
942 175.71 humidity 90 43200 > th dose dependent rect. 22 23