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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0250200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TB2/DP1 and HVA22 related protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.47 (0.0486) R2 : 0.35
β1 : -3.82 (0.263) R2dD : 0.838 R2D : 0.0131
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.02 (0.223) R2dE : 0.384 R2E : -0.488
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.66 (0.132) R2dN8 : 0.0949 R2N8 : -0.163
σ : 0.82
deviance : 310.08
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 1.649
memory length : 31216
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.76 0.787 5.59 -4.92 0.51 2.33 0.0711 -12.6 -0.143 1.55 28.01 1267 -- --
288.64 0.791 5.45 -3.66 0.615 1.84 0.133 -- -0.582 1.41 -2.284 29432 -- --
280.74 0.78 5.59 -4.93 0.516 2.34 -- -12.7 -0.123 1.59 28.11 1265 -- --
287.85 0.79 5.47 -3.74 0.615 1.91 -- -- -0.628 1.37 2.038 30837 -- --
295.64 0.801 5.57 -4.86 -- 2.44 -- -12.5 -0.122 -- 27.98 1224 -- --
338.57 0.863 5.28 -1.95 0.666 -- 0.0921 -- 0.173 1.27 -- -- -- --
338.61 0.862 5.28 -1.95 0.666 -- -- -- 0.173 1.29 -- -- -- --
310.08 0.82 5.47 -3.82 -- 2.02 -- -- -0.66 -- 1.649 31216 -- --
411.49 0.945 5.18 -- 0.668 -0.843 -- -- 0.645 1.22 11.69 47520 -- --
365.98 0.894 5.27 -1.93 -- -- -- -- 0.187 -- -- -- -- --
439.26 0.98 5.24 -- 0.633 -- -- -- 0.39 1.17 -- -- -- --
438.97 0.976 5.17 -- -- -0.803 -- -- 0.642 -- 10.6 47520 -- --
464.06 1.01 5.23 -- -- -- -- -- 0.4 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.60 radiation 40.0 14400 > th dose dependent rect. 15 18
2 259.96 radiation 40.0 14400 > th dose dependent rect. 8 1
19 268.54 radiation 40.0 4320 < th dose independent rect. 8 1
20 269.28 humidity 90.0 14400 < th dose independent rect. 24 1
21 270.27 humidity 90.0 14400 < th dose independent rect. 2 1
22 270.38 humidity 90.0 14400 < th dose independent rect. 24 3
23 271.84 humidity 90.0 14400 > th dose independent rect. 2 1
24 271.91 radiation 30.0 14400 < th dose independent rect. 16 12
26 272.02 humidity 80.0 720 < th dose dependent rect. 17 14
28 272.24 radiation 40.0 4320 > th dose independent rect. 15 18
30 272.35 radiation 30.0 14400 < th dose independent rect. 16 2
36 272.77 radiation 30.0 14400 < th dose independent rect. 16 9
45 273.79 radiation 30.0 14400 < th dose independent rect. 16 7
48 273.82 radiation 40.0 4320 > th dose independent rect. 8 1
77 274.80 radiation 40.0 14400 < th dose independent rect. 15 18
79 274.94 radiation 40.0 4320 < th dose independent rect. 6 3
80 275.21 radiation 40.0 4320 < th dose independent rect. 22 11
85 275.31 radiation 40.0 4320 < th dose independent rect. 24 9
98 275.65 radiation 40.0 14400 < th dose independent rect. 2 7
123 277.17 humidity 80.0 720 < th dose dependent rect. 18 1
124 277.27 wind 7.0 43200 > th dose independent rect. 10 2
128 277.54 wind 7.0 43200 < th dose independent rect. 10 2
146 278.81 radiation 20.0 14400 > th dose independent rect. 17 14
150 279.00 radiation 20.0 14400 > th dose dependent rect. 16 15
151 279.04 radiation 10.0 14400 > th dose independent rect. 5 1
166 279.09 humidity 90.0 43200 > th dose dependent rect. 5 1
169 279.14 wind 7.0 43200 < th dose independent rect. 5 8
170 279.19 radiation 1.0 720 > th dose dependent rect. 18 11
172 279.22 wind 7.0 43200 > th dose independent rect. 5 8
181 279.56 wind 5.0 43200 > th dose dependent rect. 10 2
182 279.61 humidity 90.0 43200 > th dose dependent rect. 4 3
186 279.68 humidity 90.0 43200 > th dose independent rect. 4 3
191 279.87 wind 1.0 43200 > th dose independent rect. 9 1
194 279.88 radiation 10.0 1440 < th dose dependent rect. 18 10
216 280.10 humidity 90.0 43200 > th dose independent rect. 3 6
230 280.36 temperature 30.0 720 > th dose dependent rect. 18 1
263 280.65 humidity 90.0 43200 > th dose independent rect. 2 10
268 280.68 humidity 90.0 43200 > th dose independent rect. 5 1
272 280.71 radiation 30.0 14400 > th dose dependent rect. 15 2
291 280.76 wind 7.0 43200 > th dose independent rect. 24 14
292 280.76 wind 7.0 43200 < th dose independent rect. 24 14
313 280.96 radiation 10.0 14400 < th dose dependent rect. 18 11
329 281.18 radiation 20.0 14400 < th dose independent rect. 4 2
333 281.22 radiation 40.0 14400 < th dose dependent rect. 18 10
344 281.36 humidity 90.0 43200 > th dose dependent sin 3 NA
385 281.77 humidity 90.0 43200 < th dose independent rect. 2 10
395 281.83 wind 1.0 43200 < th dose independent rect. 9 1
413 281.85 humidity 90.0 43200 < th dose independent rect. 3 8
441 281.91 radiation 1.0 14400 < th dose dependent rect. 22 7
475 282.01 radiation 10.0 14400 < th dose dependent rect. 18 1
484 282.07 wind 7.0 43200 < th dose independent sin 5 NA
510 282.19 radiation 10.0 1440 < th dose dependent rect. 18 1
518 282.24 humidity 90.0 43200 > th dose independent sin 4 NA
524 282.28 wind 7.0 43200 > th dose independent sin 5 NA
564 282.45 humidity 80.0 720 > th dose independent rect. 19 4
592 282.55 wind 5.0 43200 > th dose dependent rect. 5 9
597 282.57 humidity 90.0 14400 > th dose dependent rect. 1 2
617 282.69 wind 5.0 43200 > th dose dependent rect. 4 11
629 282.74 radiation 10.0 1440 < th dose dependent rect. 18 7
636 282.76 humidity 90.0 43200 < th dose independent sin 4 NA
640 282.77 wind 5.0 43200 > th dose dependent rect. 24 15
641 282.77 humidity 90.0 43200 > th dose dependent rect. 22 15
666 282.85 precipitation 0.1 43200 < th dose independent rect. 4 6
667 282.85 precipitation 0.1 43200 < th dose dependent rect. 4 6
685 282.90 humidity 90.0 43200 > th dose dependent rect. 22 18
689 282.91 humidity 90.0 43200 > th dose dependent rect. 22 21
691 282.92 radiation 1.0 43200 > th dose independent rect. 18 1
745 283.01 humidity 90.0 43200 > th dose dependent rect. 18 19
748 283.02 wind 1.0 43200 < th dose dependent rect. 9 1
768 283.08 wind 9.0 43200 > th dose independent rect. 9 11
769 283.08 humidity 90.0 43200 > th dose independent rect. 22 15
790 283.09 radiation 1.0 43200 < th dose independent rect. 6 2
799 283.12 radiation 1.0 720 > th dose dependent rect. 18 1
852 283.23 radiation 1.0 43200 > th dose independent rect. 18 14
868 283.26 precipitation 0.1 43200 > th dose independent rect. 4 6
871 283.26 humidity 90.0 43200 > th dose dependent no NA NA
872 283.26 precipitation 0.1 43200 > th dose dependent rect. 4 6
916 283.37 humidity 90.0 43200 > th dose dependent rect. 11 23
920 283.41 radiation 1.0 43200 > th dose independent rect. 18 17
931 283.45 humidity 90.0 43200 > th dose independent rect. 22 1
946 283.50 precipitation 0.1 43200 < th dose independent rect. 4 3
949 283.50 precipitation 0.1 43200 < th dose dependent rect. 4 3
979 283.58 radiation 1.0 43200 < th dose independent rect. 18 14
984 283.60 humidity 90.0 43200 < th dose independent rect. 5 1
993 283.63 wind 9.0 43200 < th dose independent rect. 9 11
999 283.64 humidity 90.0 43200 > th dose dependent rect. 8 1