BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0250200 Os03g0250200|AK068940
(250 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0250200 TB2/DP1 and HVA22 related protein family protein 481 e-136
Os10g0177400 TB2/DP1 and HVA22 related protein family protein 249 9e-67
Os03g0132300 TB2/DP1 and HVA22 related protein family protein 206 1e-53
Os09g0533800 172 2e-43
Os11g0156600 TB2/DP1 and HVA22 related protein family protein 143 1e-34
Os12g0158600 TB2/DP1 and HVA22 related protein family protein 139 2e-33
Os04g0415200 TB2/DP1 and HVA22 related protein family protein 123 1e-28
>Os03g0250200 TB2/DP1 and HVA22 related protein family protein
Length = 250
Score = 481 bits (1239), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/250 (94%), Positives = 236/250 (94%)
Query: 1 MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT 60
MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT
Sbjct: 1 MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT 60
Query: 61 ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV 120
ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV
Sbjct: 61 ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV 120
Query: 121 VLYFQKAATVGQNTFFDVLKYVAXXXXXXXXXXXXXXVLTCFSSSKLFTEQTHLLLTTGI 180
VLYFQKAATVGQNTFFDVLKYVA VLTCFSSSKLFTEQTHLLLTTGI
Sbjct: 121 VLYFQKAATVGQNTFFDVLKYVASQSPSQRSSQQPSQVLTCFSSSKLFTEQTHLLLTTGI 180
Query: 181 TEFTISVQSLMLKFSGALLKQFYPCCLASLLAICFFFMQDAFTITAVLPSHVDLVSAATF 240
TEFTISVQSLMLKFSGALLKQFYPCCLASLLAICFFFMQDAFTITAVLPSHVDLVSAATF
Sbjct: 181 TEFTISVQSLMLKFSGALLKQFYPCCLASLLAICFFFMQDAFTITAVLPSHVDLVSAATF 240
Query: 241 SINYRNRNNL 250
SINYRNRNNL
Sbjct: 241 SINYRNRNNL 250
>Os10g0177400 TB2/DP1 and HVA22 related protein family protein
Length = 233
Score = 249 bits (637), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 112/143 (78%), Positives = 131/143 (91%)
Query: 1 MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT 60
MMG FLSRVLLLAFGYAYPAYECYKTVELNKPEIE+LIFWCQYWILVAL+TV+ERFGDF
Sbjct: 1 MMGDFLSRVLLLAFGYAYPAYECYKTVELNKPEIEKLIFWCQYWILVALLTVLERFGDFA 60
Query: 61 ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV 120
ISWLP YSEAKLMFFIYLW P+TKGT+Y+Y TFFRPYISQ+EN+ID ++L+LR RA D++
Sbjct: 61 ISWLPLYSEAKLMFFIYLWCPRTKGTSYVYETFFRPYISQYENDIDCSILDLRVRAGDML 120
Query: 121 VLYFQKAATVGQNTFFDVLKYVA 143
V+Y+QK A +GQ TFF++LKY +
Sbjct: 121 VVYWQKVAIIGQTTFFNILKYAS 143
>Os03g0132300 TB2/DP1 and HVA22 related protein family protein
Length = 288
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 115/143 (80%)
Query: 1 MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT 60
M G F++ L+L GYAYPAY+CYKTVELNKPEIE+L FWCQYWIL+A++TV +R GD
Sbjct: 1 MAGSFITGALMLILGYAYPAYDCYKTVELNKPEIEKLRFWCQYWILLAVLTVFDRVGDNF 60
Query: 61 ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV 120
+SWLP YSEAKL F ++LWYPKT GT Y+Y +FF+P+I+++E +ID NLLELR RA D+
Sbjct: 61 VSWLPMYSEAKLAFVVFLWYPKTLGTAYVYESFFKPWIAKYEADIDHNLLELRTRACDMA 120
Query: 121 VLYFQKAATVGQNTFFDVLKYVA 143
VLYFQK + GQ +++L+YVA
Sbjct: 121 VLYFQKVSNYGQTRLYEILQYVA 143
>Os09g0533800
Length = 188
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 101/139 (72%)
Query: 5 FLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFTISWL 64
++R+L L GYAYPAY+CYKT+ELNKP+I+QL FWCQYWIL+A +T +E FT+SWL
Sbjct: 5 LITRLLTLVLGYAYPAYDCYKTLELNKPQIDQLRFWCQYWILLAFLTTLETITYFTVSWL 64
Query: 65 PFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVVVLYF 124
P Y EAKL +YLWYPKT+G ++Y ++ +P +++HE +IDR LL+LRA A D +
Sbjct: 65 PMYGEAKLALVLYLWYPKTRGAKHVYESYLQPVLARHEADIDRGLLQLRASAKDATASHL 124
Query: 125 QKAATVGQNTFFDVLKYVA 143
Q A ++G+ F +V V+
Sbjct: 125 QAAVSLGRACFAEVAGRVS 143
>Os11g0156600 TB2/DP1 and HVA22 related protein family protein
Length = 217
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 92/142 (64%), Gaps = 4/142 (2%)
Query: 1 MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT 60
M+G +S+VLL+ FGYA PA+EC+KT+E + L FWCQYWI+V+++ E F
Sbjct: 1 MLGELISKVLLVLFGYAMPAFECFKTLETRPDDAHMLRFWCQYWIIVSMVIACESF---- 56
Query: 61 ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV 120
+SW+P Y E KL FF+YLWYPKTKG+ +Y +F RP + Q+E I++ L LRA + ++
Sbjct: 57 VSWMPMYGEIKLAFFVYLWYPKTKGSDVVYDSFIRPTVMQYEPNIEQRLEHLRANSGQLI 116
Query: 121 VLYFQKAATVGQNTFFDVLKYV 142
Y + A G F D L+YV
Sbjct: 117 AFYIKNFADKGTAFFMDFLRYV 138
>Os12g0158600 TB2/DP1 and HVA22 related protein family protein
Length = 161
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 94/142 (66%), Gaps = 4/142 (2%)
Query: 1 MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT 60
M+G LSR+LLL FGYA PA+EC+KTVE + L FWCQYWI+VA++ E
Sbjct: 1 MLGELLSRILLLLFGYAMPAFECFKTVEARPNDAHMLRFWCQYWIIVAMVIAFESL---- 56
Query: 61 ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV 120
ISW+P Y E KL FF+YLWYPKTKG+ +Y TF RP + Q+E I++ LL LRA++ ++
Sbjct: 57 ISWMPMYGEIKLAFFVYLWYPKTKGSDVVYDTFLRPIVMQYEPNIEQRLLHLRAKSGQLL 116
Query: 121 VLYFQKAATVGQNTFFDVLKYV 142
Y + A G F DVL+YV
Sbjct: 117 SFYMKNFADKGTAFFMDVLRYV 138
>Os04g0415200 TB2/DP1 and HVA22 related protein family protein
Length = 192
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%)
Query: 5 FLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFTISWL 64
FL++ L FGYA PA EC+K +E + L FWCQYWI++ ++ + + S +
Sbjct: 5 FLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWIILVILVIFDDIAGVLTSKI 64
Query: 65 PFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVVVLYF 124
P YSE +L F +YLWYP+T+GT +Y TF RP + Q++ I+ L LRA A D+++ Y
Sbjct: 65 PMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDILIFYL 124
Query: 125 QKAATVGQNTFFDVLKYV 142
+ G + F ++Y+
Sbjct: 125 KNFTDRGYDLFLRGMEYI 142
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.141 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,608,687
Number of extensions: 218215
Number of successful extensions: 527
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 7
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 155 (64.3 bits)