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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0156600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TB2/DP1 and HVA22 related protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0355) R2 : 0.384
β1 : 1.03 (0.134) R2dD : 0.0913 R2D : 0.0977
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.59 (0.3) R2dE : 0.207 R2E : 0.21
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.613 (0.0761) R2dN8 : 0.117 R2N8 : 0.0175
σ : 0.664
deviance : 203.37
__
_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.3644
memory length : 504
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
199.42 0.663 3.54 1.14 0.156 -2.23 1.27 -2.14 0.6 21.6 0.01471 633 -- --
199.81 0.658 3.56 1.18 0.146 -2.57 1.44 -- 0.611 21.3 0.4843 794 -- --
202.32 0.662 3.54 1.1 0.112 -2.9 -- -2.21 0.6 21.4 0.3573 504 -- --
202.69 0.663 3.57 1.1 0.158 -3.41 -- -- 0.587 23.9 0.7448 513 -- --
203.04 0.664 3.54 1.07 -- -2.99 -- -2.08 0.601 -- 0.4922 504 -- --
251.59 0.744 3.57 1.47 0.273 -- 1.59 -- 0.525 22.9 -- -- -- --
261.58 0.757 3.57 1.4 0.282 -- -- -- 0.517 0.372 -- -- -- --
203.37 0.664 3.55 1.03 -- -3.59 -- -- 0.613 -- 0.3644 504 -- --
232.1 0.71 3.57 -- 0.192 -3.39 -- -- 0.509 0.603 0.4938 624 -- --
266.56 0.763 3.57 1.41 -- -- -- -- 0.522 -- -- -- -- --
313.46 0.828 3.61 -- 0.302 -- -- -- 0.361 0.612 -- -- -- --
230.95 0.708 3.57 -- -- -4.09 -- -- 0.514 -- 0.06746 504 -- --
319.19 0.834 3.6 -- -- -- -- -- 0.365 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 187.77 humidity 90.0 720 > th dose dependent rect. 9 14
4 188.12 humidity 90.0 720 > th dose dependent rect. 13 10
6 188.28 humidity 90.0 720 > th dose dependent rect. 15 8
10 189.20 humidity 90.0 720 > th dose dependent sin 20 NA
36 192.48 humidity 90.0 720 > th dose dependent rect. 19 2
41 193.06 humidity 90.0 720 > th dose independent rect. 16 7
60 193.89 humidity 90.0 720 > th dose independent rect. 10 14
114 195.75 humidity 90.0 720 > th dose independent sin 20 NA
119 195.93 radiation 1.0 720 < th dose dependent rect. 7 18
125 196.01 radiation 1.0 1440 < th dose dependent rect. 7 12
133 196.11 radiation 1.0 1440 < th dose dependent rect. 7 20
142 196.36 precipitation 0.1 43200 > th dose dependent rect. 19 2
146 196.52 radiation 1.0 720 < th dose dependent rect. 16 9
151 196.81 precipitation 0.1 720 < th dose independent rect. 7 23
153 196.81 precipitation 0.1 720 < th dose dependent rect. 7 23
155 196.86 radiation 1.0 1440 < th dose dependent sin 20 NA
161 197.09 radiation 1.0 1440 < th dose dependent rect. 15 4
165 197.12 radiation 1.0 1440 < th dose dependent rect. 13 6
197 197.24 radiation 1.0 1440 < th dose dependent rect. 13 14
210 197.29 radiation 1.0 1440 < th dose dependent rect. 9 10
219 197.33 radiation 1.0 1440 < th dose dependent rect. 9 15
312 197.99 precipitation 0.1 43200 < th dose independent rect. 19 1
313 197.99 precipitation 0.1 43200 < th dose dependent rect. 19 1
330 198.38 humidity 90.0 720 < th dose independent rect. 7 17
334 198.51 precipitation 0.1 4320 > th dose dependent rect. 13 3
337 198.59 precipitation 0.1 4320 < th dose independent rect. 13 2
338 198.59 precipitation 0.1 4320 < th dose dependent rect. 13 2
339 198.63 precipitation 0.1 4320 > th dose independent rect. 13 2
343 198.65 wind 3.0 43200 > th dose independent rect. 3 10
344 198.66 precipitation 0.1 43200 > th dose independent rect. 19 1
347 198.73 precipitation 0.1 720 > th dose independent rect. 18 23
363 199.03 wind 3.0 43200 > th dose independent rect. 7 6
366 199.05 wind 3.0 43200 < th dose independent rect. 3 10
369 199.13 precipitation 0.1 4320 > th dose dependent rect. 10 4
372 199.16 wind 7.0 43200 < th dose dependent rect. 5 8
378 199.24 wind 9.0 43200 < th dose dependent rect. 11 2
379 199.25 radiation 1.0 1440 < th dose independent rect. 7 12
384 199.28 radiation 1.0 1440 < th dose independent rect. 7 17
395 199.33 radiation 1.0 1440 < th dose independent rect. 7 20
412 199.45 wind 1.0 43200 > th dose dependent rect. 5 8
413 199.46 wind 1.0 43200 > th dose dependent rect. 11 2
416 199.49 wind 9.0 43200 < th dose dependent rect. 24 14
420 199.52 wind 9.0 43200 < th dose dependent rect. 3 11
434 199.60 radiation 1.0 1440 < th dose independent sin 22 NA
437 199.62 precipitation 0.1 720 > th dose independent rect. 10 21
439 199.63 precipitation 0.1 720 > th dose independent rect. 5 23
440 199.63 precipitation 0.1 1440 > th dose dependent rect. 5 10
445 199.64 precipitation 0.1 720 > th dose independent rect. 12 19
452 199.66 precipitation 0.1 720 > th dose dependent rect. 19 22
455 199.67 wind 1.0 43200 > th dose dependent rect. 24 14
456 199.69 radiation 1.0 1440 < th dose independent sin 14 NA
460 199.69 wind 1.0 43200 > th dose dependent rect. 3 11
466 199.75 precipitation 0.1 720 > th dose independent rect. 23 23
476 199.80 radiation 1.0 1440 < th dose independent rect. 16 3
478 199.81 precipitation 0.1 4320 > th dose independent rect. 11 3
492 199.84 precipitation 0.1 720 > th dose independent no NA NA
493 199.84 precipitation 0.1 720 < th dose independent no NA NA
494 199.84 radiation 1.0 1440 < th dose independent rect. 16 8
496 199.84 precipitation 0.1 720 < th dose dependent no NA NA
498 199.85 precipitation 0.1 1440 > th dose independent rect. 5 10
515 199.89 wind 3.0 43200 < th dose independent rect. 24 12
516 199.89 precipitation 0.1 720 > th dose independent rect. 16 23
521 199.90 precipitation 0.1 720 < th dose independent rect. 13 16
523 199.90 precipitation 0.1 720 < th dose dependent rect. 13 16
532 199.93 wind 3.0 43200 < th dose independent rect. 7 5
534 199.93 radiation 1.0 1440 < th dose independent rect. 16 11
582 200.08 wind 7.0 43200 < th dose dependent rect. 20 17
588 200.11 precipitation 0.1 720 > th dose independent rect. 3 23
618 200.22 precipitation 0.1 4320 < th dose independent rect. 11 3
622 200.22 precipitation 0.1 4320 < th dose dependent rect. 11 3
633 200.31 wind 9.0 43200 < th dose dependent sin 5 NA
644 200.34 wind 3.0 43200 > th dose independent rect. 21 13
645 200.34 wind 1.0 43200 > th dose dependent sin 5 NA
658 200.37 wind 3.0 43200 > th dose independent rect. 21 16
662 200.38 wind 3.0 43200 < th dose independent rect. 21 13
667 200.39 precipitation 0.1 1440 < th dose independent rect. 5 10
671 200.39 precipitation 0.1 1440 < th dose dependent rect. 5 10
683 200.42 wind 1.0 43200 > th dose dependent rect. 20 17
724 200.53 radiation 1.0 720 > th dose independent rect. 8 22
735 200.58 humidity 90.0 720 < th dose independent rect. 16 8
751 200.64 wind 1.0 43200 > th dose independent rect. 1 1
780 200.78 wind 1.0 43200 < th dose independent rect. 1 1
787 200.83 wind 3.0 43200 > th dose independent sin 7 NA
839 201.02 humidity 80.0 720 < th dose independent rect. 15 6
844 201.03 wind 3.0 43200 < th dose dependent rect. 1 3
857 201.09 humidity 50.0 720 > th dose dependent rect. 16 15
887 201.18 wind 3.0 43200 > th dose dependent rect. 5 2
895 201.21 precipitation 0.1 1440 > th dose independent rect. 7 8
904 201.26 precipitation 0.1 720 < th dose independent rect. 13 23
907 201.26 precipitation 0.1 720 < th dose dependent rect. 13 23
910 201.28 humidity 90.0 720 < th dose independent sin 20 NA
913 201.28 radiation 1.0 1440 < th dose independent rect. 16 23
915 201.29 wind 3.0 43200 < th dose independent sin 7 NA
943 201.40 radiation 1.0 1440 < th dose dependent rect. 2 17
947 201.41 radiation 1.0 1440 < th dose dependent rect. 2 22
960 201.44 precipitation 0.1 720 < th dose independent rect. 21 23
962 201.44 radiation 1.0 1440 < th dose dependent rect. 22 21
966 201.44 precipitation 0.1 720 < th dose dependent rect. 21 23
982 201.47 radiation 1.0 1440 > th dose independent rect. 7 12