BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0250200 Os03g0250200|AK068940
(250 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G75700.1 | chr1:28423956-28424931 FORWARD LENGTH=178 226 7e-60
AT5G42560.1 | chr5:17015573-17016969 FORWARD LENGTH=297 225 2e-59
AT1G19950.1 | chr1:6925043-6926527 FORWARD LENGTH=316 214 3e-56
AT2G36020.1 | chr2:15123424-15125140 REVERSE LENGTH=259 190 7e-49
AT4G36720.1 | chr4:17307769-17309668 FORWARD LENGTH=201 62 4e-10
AT2G42820.1 | chr2:17817460-17818301 REVERSE LENGTH=159 53 2e-07
AT1G69700.1 | chr1:26220337-26221663 FORWARD LENGTH=185 48 5e-06
>AT1G75700.1 | chr1:28423956-28424931 FORWARD LENGTH=178
Length = 177
Score = 226 bits (577), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 96/142 (67%), Positives = 121/142 (85%)
Query: 1 MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT 60
M+G FL+R LL+ FGYAYPAYEC+KTVELNKPEI+QL FWCQYWI+VA +T+ ER GD
Sbjct: 1 MIGSFLTRGLLMVFGYAYPAYECFKTVELNKPEIQQLQFWCQYWIIVAALTIFERIGDAL 60
Query: 61 ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV 120
+SWLP YSEAKL FFIYLW+PKTKGTTY+Y +FFRPYI++HENEIDRNL++++ RA D+
Sbjct: 61 VSWLPMYSEAKLAFFIYLWFPKTKGTTYVYDSFFRPYIAKHENEIDRNLVKVKTRAKDMA 120
Query: 121 VLYFQKAATVGQNTFFDVLKYV 142
++Y QKA GQ FF++L+Y+
Sbjct: 121 MIYLQKAINQGQTKFFEILQYI 142
>AT5G42560.1 | chr5:17015573-17016969 FORWARD LENGTH=297
Length = 296
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 97/143 (67%), Positives = 119/143 (83%)
Query: 1 MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT 60
M+G FL+R L++ GYAYPAYECYKTVE N+PEIEQL FWCQYWILVA +TV ER GD
Sbjct: 1 MIGSFLTRGLVMVLGYAYPAYECYKTVEKNRPEIEQLRFWCQYWILVACLTVFERVGDAF 60
Query: 61 ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV 120
+SW+P YSEAKL FFIYLWYPKT+GTTY+Y +FFRPY+SQHEN+ID +LLELR RA D+
Sbjct: 61 VSWVPMYSEAKLAFFIYLWYPKTRGTTYVYESFFRPYLSQHENDIDHSLLELRTRAGDMA 120
Query: 121 VLYFQKAATVGQNTFFDVLKYVA 143
V+Y+Q+ A+ GQ ++L+YVA
Sbjct: 121 VIYWQRVASYGQTRILEILQYVA 143
>AT1G19950.1 | chr1:6925043-6926527 FORWARD LENGTH=316
Length = 315
Score = 214 bits (545), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 116/143 (81%)
Query: 1 MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT 60
M+G FL+R L++ FGYAYPAYECYK VE NKPE++QL FWCQYWILVA +T+ ER GD
Sbjct: 1 MIGSFLTRGLVMVFGYAYPAYECYKAVEKNKPEMQQLRFWCQYWILVAALTIFERVGDAL 60
Query: 61 ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV 120
SW+P Y EAKL FFIYLW+PKT+GTTY+Y +FF+PY+++HENEIDR+L+ELR +A D+
Sbjct: 61 ASWVPLYCEAKLAFFIYLWFPKTRGTTYVYDSFFQPYVAKHENEIDRSLIELRTKAGDLA 120
Query: 121 VLYFQKAATVGQNTFFDVLKYVA 143
V+Y +KA + GQ ++L +VA
Sbjct: 121 VIYCRKAVSYGQTRIVEILHFVA 143
>AT2G36020.1 | chr2:15123424-15125140 REVERSE LENGTH=259
Length = 258
Score = 190 bits (482), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 107/142 (75%)
Query: 1 MMGGFLSRVLLLAFGYAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFT 60
M+G F+ R+L+L GY YPA+EC+KTVE NK +IE+L FWCQYWIL+AL++ ER GDF
Sbjct: 1 MLGDFIIRLLVLILGYTYPAFECFKTVEKNKVDIEELRFWCQYWILLALISSFERVGDFF 60
Query: 61 ISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDRNLLELRARATDVV 120
ISWLP Y E K++FF+YLWYPKTKGT ++Y T +PY++QHE EIDR ++ELRARA D
Sbjct: 61 ISWLPLYGEMKVVFFVYLWYPKTKGTRHVYETLLKPYMAQHETEIDRKIMELRARAWDFF 120
Query: 121 VLYFQKAATVGQNTFFDVLKYV 142
+ YF A GQ+T +YV
Sbjct: 121 IFYFNNFAQAGQSTLIQGFQYV 142
>AT4G36720.1 | chr4:17307769-17309668 FORWARD LENGTH=201
Length = 200
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 8 RVLLLAFGYAYPAYECYKTVELNKPEIEQ--LIFWCQYWILVALMTVMERFGDFTISWLP 65
R + G P Y +K +E +Q LI+W Y +++E F D ISW P
Sbjct: 38 RTACCSIGIGLPVYSTFKAIESGDENEQQKMLIYWAAY----GSFSLVEVFTDKIISWFP 93
Query: 66 FYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYISQHENEIDR 107
Y K F ++L P +G+ IY RP++ +H+ +D+
Sbjct: 94 LYYHVKFAFLVWLQLPTVEGSKQIYNNQIRPFLLRHQARVDQ 135
>AT2G42820.1 | chr2:17817460-17818301 REVERSE LENGTH=159
Length = 158
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 18 YPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFTISWLPFYSEAKLMFFIY 77
YP Y ++ +E P + W YWI+ +L+T+ E ++WLPF+ KL+F ++
Sbjct: 23 YPLYASFRAIE--SPTMLDDQQWLTYWIIYSLITIFELSVWRVLAWLPFWPYLKLLFCMW 80
Query: 78 LWYPKTKGTTYIYGTFFRPYISQHEN 103
L P G YIY F R Y+ N
Sbjct: 81 LVLPMFSGAAYIYSNFVRQYVKIGMN 106
>AT1G69700.1 | chr1:26220337-26221663 FORWARD LENGTH=185
Length = 184
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 18 YPAYECYKTVELNK-PEIEQLIFWCQYWILVALMTVMERFGDFTISWLPFYSEAKLMFFI 76
YP Y K +E PE EQ W YW+L AL+++ E + W P + KL
Sbjct: 30 YPLYASVKAIETRSLPEDEQ---WLTYWVLYALISLFELTFSKPLEWFPIWPYMKLFGIC 86
Query: 77 YLWYPKTKGTTYIYGTFFRPY 97
+L P+ G +IY F RP+
Sbjct: 87 WLVLPQFNGAEHIYKHFIRPF 107
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.141 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,677,866
Number of extensions: 165948
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 10
Length of query: 250
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 154
Effective length of database: 8,474,633
Effective search space: 1305093482
Effective search space used: 1305093482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 110 (47.0 bits)