BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0141400 Os11g0141400|AK070778
(92 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0141400 Similar to Calmodulin-like protein CaML3 130 2e-31
Os12g0138000 Parvalbumin family protein 118 8e-28
Os01g0949300 EF-Hand type domain containing protein 80 4e-16
Os01g0949500 Similar to Calmodulin (CaM) 68 2e-12
Os09g0458700 Calcium-binding EF-hand domain containing protein 66 6e-12
Os04g0492800 Similar to Calmodulin (CaM) 66 6e-12
Os01g0135700 Flagellar calcium-binding protein (calflagin) ... 65 1e-11
Os12g0228800 Similar to Calmodulin-like protein 64 2e-11
Os12g0603800 Similar to Calmodulin NtCaM13 63 4e-11
>Os11g0141400 Similar to Calmodulin-like protein CaML3
Length = 92
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/92 (77%), Positives = 71/92 (77%)
Query: 1 MLAEAECXXXXXXXXXXXXXXXXXXXXXTFAVFDADGDGRISAEELRAVLASLGDELCSV 60
MLAEAEC TFAVFDADGDGRISAEELRAVLASLGDELCSV
Sbjct: 1 MLAEAECAGELVLEEIAAAAADEGELKETFAVFDADGDGRISAEELRAVLASLGDELCSV 60
Query: 61 DDCRRMIGGVDTDGDGFVCFDEFARMMMYGCA 92
DDCRRMIGGVDTDGDGFVCFDEFARMMMYGCA
Sbjct: 61 DDCRRMIGGVDTDGDGFVCFDEFARMMMYGCA 92
>Os12g0138000 Parvalbumin family protein
Length = 92
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/64 (96%), Positives = 62/64 (96%)
Query: 29 TFAVFDADGDGRISAEELRAVLASLGDELCSVDDCRRMIGGVDTDGDGFVCFDEFARMMM 88
TFAVFDADGDGRISAEELRAVLASLGDELCSVDDCRRMIGGVDTDGDGFVCFDEFARMMM
Sbjct: 29 TFAVFDADGDGRISAEELRAVLASLGDELCSVDDCRRMIGGVDTDGDGFVCFDEFARMMM 88
Query: 89 YGCA 92
G A
Sbjct: 89 CGRA 92
>Os01g0949300 EF-Hand type domain containing protein
Length = 204
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 49/59 (83%), Gaps = 3/59 (5%)
Query: 30 FAVFDADGDGRISAEELRAVLASL--GD-ELCSVDDCRRMIGGVDTDGDGFVCFDEFAR 85
F VFDADGDGRI+AEELR V+ ++ GD + CS+DDCRRMIGGVD DGDGFV F +FAR
Sbjct: 127 FKVFDADGDGRITAEELRGVMVAILGGDGDGCSLDDCRRMIGGVDADGDGFVGFQDFAR 185
>Os01g0949500 Similar to Calmodulin (CaM)
Length = 185
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 30 FAVFDADGDGRISAEELRAVLASLGDELCSVDDCRRMIGGVDTDGDGFVCFDEFARMMMY 89
F VFDADG+G ISA EL VL LG E +V CRRMI GVD +GDG + F+EF MM
Sbjct: 119 FRVFDADGNGTISAAELARVLHGLG-EKATVQQCRRMIEGVDQNGDGLISFEEFKVMMAG 177
Query: 90 G 90
G
Sbjct: 178 G 178
>Os09g0458700 Calcium-binding EF-hand domain containing protein
Length = 185
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 30 FAVFDADGDGRISAEELRAVLASLGDELCSVDDCRRMIGGVDTDGDGFVCFDEFARMM 87
F VFD DGDGRISAEE+ VL LGD CS++DCR M+ +D + DGFV D+F MM
Sbjct: 122 FFVFDQDGDGRISAEEVMQVLHKLGDS-CSLEDCREMVKKIDRNRDGFVDMDDFMAMM 178
>Os04g0492800 Similar to Calmodulin (CaM)
Length = 250
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 30 FAVFDADGDGRISAEELRAVLASLG-DELCSVDDCRRMIGGVDTDGDGFVCFDEFARMMM 88
F VFDA+GDG I+ +EL AVLASLG + + ++CRRMIG VD DGDG V F EF +MM
Sbjct: 183 FRVFDANGDGYITVDELGAVLASLGLKQGRTAEECRRMIGQVDRDGDGRVDFHEFLQMMR 242
Query: 89 YG 90
G
Sbjct: 243 GG 244
>Os01g0135700 Flagellar calcium-binding protein (calflagin) family protein
Length = 181
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 30 FAVFDADGDGRISAEELRAVLASLGDELCSVDDCRRMIGGVDTDGDGFVCFDEFARMM 87
F V+D DGDGRI+A EL VL +G E CS ++C RMI VD DGDG V F+EF +MM
Sbjct: 109 FDVYDVDGDGRITAAELGKVLGRIG-EGCSAEECERMIASVDVDGDGCVGFEEFKKMM 165
>Os12g0228800 Similar to Calmodulin-like protein
Length = 168
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 30 FAVFDADGDGRISAEELRAVLASLG-DELCSVDDCRRMIGGVDTDGDGFVCFDEFARMMM 88
F VFD +GDG I+ +ELR+VL+SLG + DDCRRMI VD DGDG V F EF +MM
Sbjct: 100 FNVFDQNGDGFITVDELRSVLSSLGLKHGRTADDCRRMISMVDADGDGRVDFKEFKQMMR 159
Query: 89 YG 90
G
Sbjct: 160 GG 161
>Os12g0603800 Similar to Calmodulin NtCaM13
Length = 166
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 30 FAVFDADGDGRISAEELRAVLASLGDELCSVDDCRRMIGGVDTDGDGFVCFDEFARMMMY 89
F VFD D DG ISA ELR V+ SLG++L ++ +MI D DGDG V FDEF RMMM
Sbjct: 105 FKVFDKDQDGLISAAELRHVMISLGEKLTD-EEVEQMIREADLDGDGQVNFDEFVRMMML 163
Query: 90 G 90
Sbjct: 164 S 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.142 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,662,826
Number of extensions: 99954
Number of successful extensions: 727
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 10
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)