Os11g0141400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calmodulin-like protein CaML3.
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Os11g0141400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calmodulin-like protein CaML3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.44 | 0.586 | 10.1 | 2.63 | 1.25 | -1.97 | 0.865 | 2.54 | 0.759 | 22.7 | 10 | 10 | -- | -- |
| 162.62 | 0.598 | 10.2 | 2.25 | 1.24 | -1.95 | 0.366 | -- | 0.66 | 22.6 | -5.411 | 8 | -- | -- |
| 160.88 | 0.595 | 10.1 | 2.46 | 1.24 | -1.96 | -- | 1.65 | 0.72 | 22.7 | 10 | 10 | -- | -- |
| 163.15 | 0.599 | 10.2 | 2.24 | 1.24 | -1.93 | -- | -- | 0.659 | 22.7 | 10 | 10 | -- | -- |
| 241.63 | 0.728 | 10.1 | 2.68 | -- | -2.94 | -- | 1.75 | 0.862 | -- | 10 | 10 | -- | -- |
| 198.09 | 0.66 | 10.2 | 1.88 | 1.62 | -- | 0.33 | -- | 0.39 | 23.7 | -- | -- | -- | -- |
| 198.56 | 0.66 | 10.2 | 1.87 | 1.62 | -- | -- | -- | 0.388 | 23.7 | -- | -- | -- | -- |
| 244.19 | 0.731 | 10.1 | 2.44 | -- | -2.9 | -- | -- | 0.795 | -- | 10 | 10 | -- | -- |
| 278.8 | 0.782 | 10.3 | -- | 1.43 | -0.863 | -- | -- | 0.249 | 23.2 | 24.6 | 10 | -- | -- |
| 364.22 | 0.892 | 10.2 | 1.91 | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
| 290.38 | 0.797 | 10.3 | -- | 1.65 | -- | -- | -- | 0.18 | 23.8 | -- | -- | -- | -- |
| 386.23 | 0.918 | 10.2 | -- | -- | -1.77 | -- | -- | 0.438 | -- | 20.5 | 2 | -- | -- |
| 460.81 | 1 | 10.2 | -- | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 148.70 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 2 | 149.12 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 19 | 22 |
| 26 | 152.98 | temperature | 15.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 40 | 153.80 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 41 | 153.93 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 43 | 154.01 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 67 | 154.84 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 95 | 155.46 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 96 | 155.50 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 121 | 156.21 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 127 | 156.38 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 132 | 156.47 | temperature | 30.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 138 | 156.61 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 147 | 156.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 173 | 157.12 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 185 | 157.26 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 203 | 157.53 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 207 | 157.57 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 247 | 158.09 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 250 | 158.11 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 267 | 158.26 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 268 | 158.26 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 281 | 158.44 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 320 | 158.83 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 333 | 158.93 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 335 | 158.95 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 342 | 159.06 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 365 | 159.25 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 366 | 159.26 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 369 | 159.27 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 372 | 159.27 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 385 | 159.39 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 400 | 159.49 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 405 | 159.58 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 441 | 159.95 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 444 | 159.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 480 | 160.28 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 13 |
| 486 | 160.32 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 545 | 160.89 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 570 | 161.18 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 573 | 161.20 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 578 | 161.23 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 591 | 161.35 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 604 | 161.41 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 609 | 161.47 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 669 | 161.85 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 716 | 162.15 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 778 | 162.47 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 779 | 162.47 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 800 | 162.64 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 810 | 162.70 | temperature | 25.0 | 90 | > th | dose independent | rect. | 7 | 9 |
| 823 | 162.79 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 868 | 163.07 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 879 | 163.12 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 887 | 163.14 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 924 | 163.34 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 927 | 163.36 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 928 | 163.38 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |