Os01g0949500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calmodulin (CaM).
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Os01g0949500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calmodulin (CaM).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.3 | 0.5 | 12.6 | -0.394 | 3.58 | 1.77 | 0.921 | 1.03 | -0.302 | 9.4 | 21.74 | 23 | -- | -- |
| 113.65 | 0.5 | 12.6 | -0.323 | 3.59 | 1.44 | 0.805 | -- | -0.272 | 9.4 | 22.57 | 48 | -- | -- |
| 115.66 | 0.505 | 12.6 | -0.324 | 3.58 | 1.68 | -- | 0.511 | -0.289 | 9.4 | 21.82 | 7 | -- | -- |
| 115.79 | 0.504 | 12.6 | -0.291 | 3.59 | 1.52 | -- | -- | -0.276 | 9.4 | 22.23 | 4 | -- | -- |
| 628.13 | 1.17 | 12.6 | 0.308 | -- | 3.72 | -- | 0.17 | 0.109 | -- | 44.36 | 687 | -- | -- |
| 137.55 | 0.55 | 12.6 | -0.602 | 3.47 | -- | 0.903 | -- | -0.444 | 9.22 | -- | -- | -- | -- |
| 140.45 | 0.555 | 12.6 | -0.57 | 3.47 | -- | -- | -- | -0.443 | 9.22 | -- | -- | -- | -- |
| 627.99 | 1.17 | 12.6 | 0.322 | -- | 3.69 | -- | -- | 0.127 | -- | 56.77 | 678 | -- | -- |
| 117.85 | 0.508 | 12.6 | -- | 3.6 | 1.64 | -- | -- | -0.232 | 9.42 | 22.23 | 4 | -- | -- |
| 839.47 | 1.35 | 12.7 | -0.583 | -- | -- | -- | -- | -0.426 | -- | -- | -- | -- | -- |
| 149.02 | 0.571 | 12.6 | -- | 3.47 | -- | -- | -- | -0.379 | 9.24 | -- | -- | -- | -- |
| 630.47 | 1.17 | 12.6 | -- | -- | 3.57 | -- | -- | 0.0764 | -- | 78.93 | 677 | -- | -- |
| 848.43 | 1.36 | 12.7 | -- | -- | -- | -- | -- | -0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.28 | temperature | 20 | 90 | > th | dose independent | rect. | 16 | 12 |
| 7 | 104.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 13 | 106.28 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 27 | 107.13 | temperature | 15 | 90 | > th | dose dependent | sin | 11 | NA |
| 33 | 107.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 11 |
| 35 | 107.42 | temperature | 25 | 90 | < th | dose dependent | sin | 13 | NA |
| 63 | 108.02 | temperature | 30 | 90 | < th | dose dependent | sin | 11 | NA |
| 66 | 108.15 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 150 | 109.74 | temperature | 20 | 30 | > th | dose independent | sin | 12 | NA |
| 246 | 110.82 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 20 |
| 249 | 110.87 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 2 |
| 277 | 111.25 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 328 | 111.79 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 10 |
| 336 | 111.91 | temperature | 20 | 30 | < th | dose independent | sin | 13 | NA |
| 406 | 112.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 407 | 112.38 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 429 | 112.52 | temperature | 20 | 30 | > th | dose independent | rect. | 16 | 18 |
| 496 | 112.88 | temperature | 25 | 90 | < th | dose dependent | rect. | 18 | 17 |
| 501 | 112.90 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 23 |
| 535 | 113.16 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 22 |
| 549 | 113.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 645 | 113.73 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 654 | 113.81 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 22 |
| 656 | 113.82 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 21 |
| 704 | 114.03 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 18 |
| 797 | 114.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 17 |
| 817 | 114.48 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 894 | 114.72 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 926 | 114.83 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 2 |