BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0101200 Os11g0101200|AK064386
(462 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0101200 Similar to CONSTANS-like protein CO6 (Fragment) 808 0.0
Os12g0101000 RNase P subunit p30 family protein 647 0.0
Os12g0262400 100 2e-21
Os01g0835700 CCT domain containing protein 79 5e-15
Os05g0466100 CCT domain containing protein 77 3e-14
Os03g0139500 Similar to CONSTANS-like protein CO9 (Fragment) 72 1e-12
Os10g0466500 CCT domain containing protein 71 2e-12
>Os11g0101200 Similar to CONSTANS-like protein CO6 (Fragment)
Length = 462
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/462 (86%), Positives = 399/462 (86%)
Query: 1 MTCVLSTLPASCEQHSVATNLDNPGNNETVMAHDVQTAAVSSFDLKGIEKHVESLHDAME 60
MTCVLSTLPASCEQHSVATNLDNPGNNETVMAHDVQTAAVSSFDLKGIEKHVESLHDAME
Sbjct: 1 MTCVLSTLPASCEQHSVATNLDNPGNNETVMAHDVQTAAVSSFDLKGIEKHVESLHDAME 60
Query: 61 LDGTESSKMNLIADFTAPLSSDDSLVCYAIPCSMELSDTSVVNKCPHQSTGFPDYAKACT 120
LDGTESSKMNLIADFTAPLSSDDSLVCYAIPCSMELSDTSVVNKCPHQSTGFPDYAKACT
Sbjct: 61 LDGTESSKMNLIADFTAPLSSDDSLVCYAIPCSMELSDTSVVNKCPHQSTGFPDYAKACT 120
Query: 121 ECDSGLTSCERVDRISQDHDILSGSSIYSKNKDLYSYSDISVFSETHKDFAEPLELPPCG 180
ECDSGLTSCERVDRISQDHDILSGSSIYSKNKDLYSYSDISVFSETHKDFAEPLELPPCG
Sbjct: 121 ECDSGLTSCERVDRISQDHDILSGSSIYSKNKDLYSYSDISVFSETHKDFAEPLELPPCG 180
Query: 181 KDDEAPPDLAAQLHCNSCKDVMMPPQVISDEVEPVDRGATILVEHTPCGPETALTAFLYD 240
KDDEAPPDLAAQLHCNSCKDVMMPPQVISDEVEPVDRGATILVEHTPCGPETALTAFLYD
Sbjct: 181 KDDEAPPDLAAQLHCNSCKDVMMPPQVISDEVEPVDRGATILVEHTPCGPETALTAFLYD 240
Query: 241 KGSIDTTSKTDELAKQNSNSLEGDVAKIHEQLLNYSYASGEVEISLTRSEKRTKKLRSQH 300
KGSIDTTSKTDELAKQNSNSLEGDVAKIHEQLLNYSYASGEVEISLTRSEKRTKKLRSQH
Sbjct: 241 KGSIDTTSKTDELAKQNSNSLEGDVAKIHEQLLNYSYASGEVEISLTRSEKRTKKLRSQH 300
Query: 301 PIYVPFLGFLKSVXXXXXXXXXXXXXXXXXXXLRRVLSTGGGLVXXXXXXXIDKYRSKRN 360
PIYVPFLGFLKSV LRRVLSTGGGLV IDKYRSKRN
Sbjct: 301 PIYVPFLGFLKSVSFKKKASKGWSSSSSSSSSLRRVLSTGGGLVEEERRERIDKYRSKRN 360
Query: 361 QRNFDKKITYACRKTLADSRPRVKGRFARNSSDDXXXXXXXQVEVSPATNNNVPEWWPXX 420
QRNFDKKITYACRKTLADSRPRVKGRFARNSSDD QVEVSPATNNNVPEWWP
Sbjct: 361 QRNFDKKITYACRKTLADSRPRVKGRFARNSSDDAAAAAAAQVEVSPATNNNVPEWWPAV 420
Query: 421 XXXXXXXXXXXXGXXXXXXXXXXXXXXXXGVSSIDLYSPRGH 462
G GVSSIDLYSPRGH
Sbjct: 421 QEALARQEQEAAGLHLCDTADDDLLAAYLGVSSIDLYSPRGH 462
>Os12g0101000 RNase P subunit p30 family protein
Length = 889
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MTCVLSTLPASCEQHSVATNLDNPGNNETVMAHDVQTAAVSSFDLKGIEKHVESLHDAME 60
MTCVLSTLPASCEQHSVATNLDNPGNNETVMAHDVQTAAVSSFDLKGIEKHVESLHDAME
Sbjct: 379 MTCVLSTLPASCEQHSVATNLDNPGNNETVMAHDVQTAAVSSFDLKGIEKHVESLHDAME 438
Query: 61 LDGTESSKMNLIADFTAPLSSDDSLVCYAIPCSMELSDTSVVNKCPHQSTGFPDYAKACT 120
LDGTESSKMNLIADFTAPLSSDDSLVCYAIPCSMELSDTSVVNKCPHQSTGFPDYAKACT
Sbjct: 439 LDGTESSKMNLIADFTAPLSSDDSLVCYAIPCSMELSDTSVVNKCPHQSTGFPDYAKACT 498
Query: 121 ECDSGLTSCERVDRISQDHDILSGSSIYSKNKDLYSYSDISVFSETHKDFAEPLELPPCG 180
ECDSGLTSCERVDRISQDHDILSGSSIYSKNKDLYSYSDISVFSETHKDFAEPLELPPCG
Sbjct: 499 ECDSGLTSCERVDRISQDHDILSGSSIYSKNKDLYSYSDISVFSETHKDFAEPLELPPCG 558
Query: 181 KDDEAPPDLAAQLHCNSCKDVMMPPQVISDEVEPVDRGATILVEHTPCGPETALTAFLYD 240
KDDEAPPDLAAQLHCNSCKDVMMPPQVISDEVEPVDRGATILVEHTPCGPETALTAFLYD
Sbjct: 559 KDDEAPPDLAAQLHCNSCKDVMMPPQVISDEVEPVDRGATILVEHTPCGPETALTAFLYD 618
Query: 241 KGSIDTTSKTDELAKQNSNSLEGDVAKIHEQLLNYSYASGEVEISLTRSEKRTKKLRSQH 300
KGSIDTTSKTDELAKQNSNSLEGDVAKIHEQLLNYSYASGEVEISLTRSEKRTKKLRSQH
Sbjct: 619 KGSIDTTSKTDELAKQNSNSLEGDVAKIHEQLLNYSYASGEVEISLTRSEKRTKKLRSQH 678
Query: 301 PIYVPFLGFLKSV 313
PIYVPFLGFLKSV
Sbjct: 679 PIYVPFLGFLKSV 691
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 86/130 (66%)
Query: 333 LRRVLSTGGGLVXXXXXXXIDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARNSS 392
LRRVLSTGGGLV IDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARNSS
Sbjct: 760 LRRVLSTGGGLVEEERRERIDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARNSS 819
Query: 393 DDXXXXXXXQVEVSPATNNNVPEWWPXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXGVS 452
DD QVEVSPATNNNVPEWWP G GVS
Sbjct: 820 DDAAAAAAAQVEVSPATNNNVPEWWPAVQEALARQEQEAAGLHLCDTADDDLLAAYLGVS 879
Query: 453 SIDLYSPRGH 462
SIDLYSPRGH
Sbjct: 880 SIDLYSPRGH 889
>Os12g0262400
Length = 231
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 69/148 (46%), Gaps = 28/148 (18%)
Query: 333 LRRVLSTGGGLVXXXXXXXIDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARNS- 391
L R + G I+KYRSKRN RNF++KITYACRKTLADSRPRVKGRFARNS
Sbjct: 92 LPRATAAVGRYSAEERQERIEKYRSKRNHRNFERKITYACRKTLADSRPRVKGRFARNST 151
Query: 392 ----SDDXXXXXXXQVEVSPATNNN-------------VPEWWPXXXXXXXXXXXXXXGX 434
+D +V SP N +PEWWP
Sbjct: 152 TGDAADGSQSTGLAEVVSSPLATTNAMCNDDDDGGSGDLPEWWP----------AMKEAL 201
Query: 435 XXXXXXXXXXXXXXXGVSSIDLYSPRGH 462
GVSSI+LYSPRGH
Sbjct: 202 ARQEDDDEDLLAAYLGVSSINLYSPRGH 229
>Os01g0835700 CCT domain containing protein
Length = 335
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 352 IDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARNSSDD 394
I++YR KR+QRNF+KKITYACRKTLADSRPRVKGRFARN D
Sbjct: 192 IERYRVKRHQRNFNKKITYACRKTLADSRPRVKGRFARNGEAD 234
>Os05g0466100 CCT domain containing protein
Length = 324
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/40 (82%), Positives = 37/40 (92%)
Query: 352 IDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARNS 391
I++YR KR QRNF KKITYACRKTLADSRPRV+GRFARN+
Sbjct: 185 IERYRVKRQQRNFHKKITYACRKTLADSRPRVQGRFARNA 224
>Os03g0139500 Similar to CONSTANS-like protein CO9 (Fragment)
Length = 388
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 34/39 (87%)
Query: 352 IDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARN 390
I +Y KRN+RNF KKI YACRKTLADSRPRV+GRFA+N
Sbjct: 294 ISRYIKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKN 332
>Os10g0466500 CCT domain containing protein
Length = 283
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 34/39 (87%)
Query: 352 IDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARN 390
I +Y KRN+RNF KKI YACRKTLADSRPRV+GRFA+N
Sbjct: 191 IHRYIKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKN 229
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,748,092
Number of extensions: 521724
Number of successful extensions: 930
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 8
Length of query: 462
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 358
Effective length of database: 11,605,545
Effective search space: 4154785110
Effective search space used: 4154785110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)