BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0100200 Os11g0100200|J065083C22
(224 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0100200 RNA-binding region RNP-1 (RNA recognition moti... 258 3e-69
Os12g0100100 Similar to ALY protein 248 3e-66
Os03g0278300 Similar to ALY protein 140 8e-34
Os08g0427900 Similar to Hin19 (Fragment) 129 2e-30
Os07g0237100 RNA-binding region RNP-1 (RNA recognition moti... 120 7e-28
Os06g0256200 Similar to Keratinocytes proline-rich protein 110 1e-24
>Os11g0100200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 224
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 139/211 (65%), Positives = 139/211 (65%)
Query: 14 ITNKYKXXXXXXXXXXXXXXXXXXXXXXXXXPYHAITFQAPPTAYTHPTPVETGTKLHIS 73
ITNKYK PYHAITFQAPPTAYTHPTPVETGTKLHIS
Sbjct: 14 ITNKYKRRSRPDPAPSARRFHSRAATRAAAAPYHAITFQAPPTAYTHPTPVETGTKLHIS 73
Query: 74 NLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSDALAAVKRYNNVQL 133
NLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSDALAAVKRYNNVQL
Sbjct: 74 NLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSDALAAVKRYNNVQL 133
Query: 134 DGKPMKLELIGINIEXXXXXXXXXXXXXXYFDFPPKXXXXXXXXXXXXXXXXXXXXXXXX 193
DGKPMKLELIGINIE YFDFPPK
Sbjct: 134 DGKPMKLELIGINIEPPPPAMFGFAAPAGYFDFPPKRGGRGWPRGRGGFGGRGRGHVGRG 193
Query: 194 XXXXXXXXXKISAEDLDADLDKYHAEGMQMS 224
KISAEDLDADLDKYHAEGMQMS
Sbjct: 194 RGRGDRGSRKISAEDLDADLDKYHAEGMQMS 224
>Os12g0100100 Similar to ALY protein
Length = 228
Score = 248 bits (632), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 136/214 (63%), Positives = 138/214 (64%), Gaps = 3/214 (1%)
Query: 14 ITNKYKXXXXXXXXXXXXXXXXXXXXXXXXXPYHAITFQAPPTAYTHPTP---VETGTKL 70
ITNKYK PYHAITFQAPPTAY HPTP VETGTKL
Sbjct: 15 ITNKYKRRSRPGPAPSARRSHSRAATRSAAAPYHAITFQAPPTAYVHPTPAANVETGTKL 74
Query: 71 HISNLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSDALAAVKRYNN 130
+ISNLDYAVSNEDIKELFSEVGDVKRYSINYD+SGRSKGTAEVVFSRKSDALAAVKRYNN
Sbjct: 75 YISNLDYAVSNEDIKELFSEVGDVKRYSINYDRSGRSKGTAEVVFSRKSDALAAVKRYNN 134
Query: 131 VQLDGKPMKLELIGINIEXXXXXXXXXXXXXXYFDFPPKXXXXXXXXXXXXXXXXXXXXX 190
VQLDGKPMKLELIGINIE YFDFPPK
Sbjct: 135 VQLDGKPMKLELIGINIEPPPPAIFGFAAPAGYFDFPPKRGGRGWPRGRGGFGGRGRGHV 194
Query: 191 XXXXXXXXXXXXKISAEDLDADLDKYHAEGMQMS 224
KISAEDLDADLDKYHAEGMQMS
Sbjct: 195 GRGRGRGDRGSRKISAEDLDADLDKYHAEGMQMS 228
>Os03g0278300 Similar to ALY protein
Length = 238
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 78/83 (93%)
Query: 64 VETGTKLHISNLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSDALA 123
+ETGTKL+ISNLD+ VS EDIKELFSE+GD+K+Y I+YD+SGRSKGTAEVVF+R+ DA+A
Sbjct: 67 IETGTKLYISNLDFGVSTEDIKELFSELGDLKKYVIHYDRSGRSKGTAEVVFARRGDAVA 126
Query: 124 AVKRYNNVQLDGKPMKLELIGIN 146
AVK+YNNVQLDGKPMK+E++G N
Sbjct: 127 AVKKYNNVQLDGKPMKIEILGTN 149
>Os08g0427900 Similar to Hin19 (Fragment)
Length = 286
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 75/84 (89%)
Query: 64 VETGTKLHISNLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSDALA 123
+ETGTKL+ISNLDY VSNEDIKELFSEVG +KR+++++D GR GTAEVVF+R+SDA+A
Sbjct: 86 IETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTAEVVFTRRSDAIA 145
Query: 124 AVKRYNNVQLDGKPMKLELIGINI 147
A+KRYNNV LDGK MK+E+IG ++
Sbjct: 146 ALKRYNNVLLDGKAMKIEVIGSDL 169
>Os07g0237100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 204
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 74/88 (84%), Gaps = 3/88 (3%)
Query: 64 VETGTKLHISNLDYAVSNEDIK---ELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSD 120
+ETGTKLHISNLD V+ +D++ ELFSE+G++KRYS+NYDK G+S+GTAEVVF+RK D
Sbjct: 89 LETGTKLHISNLDPGVTVDDVQVLFELFSEIGELKRYSVNYDKDGKSQGTAEVVFARKVD 148
Query: 121 ALAAVKRYNNVQLDGKPMKLELIGINIE 148
AL A+KRY+ V LDG PMK++LIG N E
Sbjct: 149 ALEAIKRYDGVILDGNPMKIDLIGNNSE 176
>Os06g0256200 Similar to Keratinocytes proline-rich protein
Length = 294
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 71/83 (85%)
Query: 65 ETGTKLHISNLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSDALAA 124
E+ TKL+ISNL Y V+ EDI+ELFSE+G +K +++YD + R G+AEV+F+R+S+A+AA
Sbjct: 107 ESSTKLYISNLHYGVTKEDIQELFSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVAA 166
Query: 125 VKRYNNVQLDGKPMKLELIGINI 147
+KRYNNV+LDGKPMK+E+IG ++
Sbjct: 167 LKRYNNVRLDGKPMKIEVIGADL 189
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,598,180
Number of extensions: 141068
Number of successful extensions: 525
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 6
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)