Os12g0100100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ALY protein.
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Os12g0100100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ALY protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.61 | 0.366 | 9.9 | 0.181 | 0.782 | 1.16 | 0.552 | 0.611 | 0.567 | 17.4 | 20.5 | 1291 | -- | -- |
| 60.92 | 0.364 | 9.92 | 0.0884 | 0.783 | 1.03 | 0.579 | -- | 0.532 | 17.4 | 20.9 | 1294 | -- | -- |
| 61.36 | 0.365 | 9.9 | 0.168 | 0.783 | 1.16 | -- | 0.564 | 0.567 | 17.5 | 20.6 | 1284 | -- | -- |
| 61.69 | 0.366 | 9.92 | 0.0777 | 0.784 | 1.04 | -- | -- | 0.529 | 17.5 | 20.9 | 1280 | -- | -- |
| 90.04 | 0.442 | 9.88 | 0.326 | -- | 0.99 | -- | 0.564 | 0.621 | -- | 20.79 | 441 | -- | -- |
| 88.32 | 0.441 | 9.86 | 0.517 | 0.749 | -- | 0.704 | -- | 0.789 | 17.7 | -- | -- | -- | -- |
| 89.52 | 0.443 | 9.86 | 0.512 | 0.754 | -- | -- | -- | 0.791 | 17.8 | -- | -- | -- | -- |
| 90.41 | 0.443 | 9.9 | 0.167 | -- | 0.982 | -- | -- | 0.532 | -- | 20.8 | 466 | -- | -- |
| 61.81 | 0.366 | 9.92 | -- | 0.782 | 1.07 | -- | -- | 0.514 | 17.5 | 20.92 | 1307 | -- | -- |
| 118.98 | 0.51 | 9.85 | 0.489 | -- | -- | -- | -- | 0.774 | -- | -- | -- | -- | -- |
| 96.44 | 0.459 | 9.87 | -- | 0.746 | -- | -- | -- | 0.734 | 17.8 | -- | -- | -- | -- |
| 90.9 | 0.444 | 9.9 | -- | -- | 0.953 | -- | -- | 0.536 | -- | 20.74 | 467 | -- | -- |
| 125.29 | 0.522 | 9.86 | -- | -- | -- | -- | -- | 0.719 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.76 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 2 | 60.80 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 3 | 60.86 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 12 | 61.00 | temperature | 20.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 34 | 61.24 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 51 | 61.45 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 64 | 61.55 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 66 | 61.56 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 75 | 61.61 | temperature | 20.0 | 1440 | < th | dose independent | sin | 14 | NA |
| 101 | 61.76 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 158 | 62.10 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 175 | 62.26 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 336 | 62.95 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 342 | 62.97 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 389 | 63.15 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 446 | 63.35 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 468 | 63.47 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 469 | 63.48 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 487 | 63.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 491 | 63.57 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 506 | 63.65 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 513 | 63.67 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 536 | 63.75 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 537 | 63.75 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 555 | 63.84 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 574 | 63.93 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 621 | 64.08 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 640 | 64.18 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 646 | 64.19 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 710 | 64.50 | temperature | 25.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 717 | 64.52 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 745 | 64.63 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 748 | 64.65 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 778 | 64.73 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 802 | 64.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 803 | 64.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 827 | 64.88 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 852 | 65.00 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 873 | 65.10 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 892 | 65.17 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 915 | 65.23 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 966 | 65.39 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 17 |