Os06g0256200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Keratinocytes proline-rich protein.
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Os06g0256200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Keratinocytes proline-rich protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.19 | 0.177 | 11.3 | 1.11 | 0.157 | -0.607 | 0.171 | 0.424 | 0.332 | 20.9 | 20.75 | 1256 | -- | -- |
| 14.38 | 0.177 | 11.3 | 1 | 0.161 | -0.564 | 0.252 | -- | 0.299 | 20.5 | 20.17 | 1266 | -- | -- |
| 14.28 | 0.176 | 11.3 | 1.12 | 0.153 | -0.603 | -- | 0.494 | 0.337 | 20.9 | 20.99 | 1275 | -- | -- |
| 14.47 | 0.177 | 11.3 | 1 | 0.151 | -0.587 | -- | -- | 0.298 | 20.7 | 19.91 | 1263 | -- | -- |
| 15.38 | 0.183 | 11.3 | 1.12 | -- | -0.578 | -- | 0.448 | 0.335 | -- | 20.93 | 1383 | -- | -- |
| 24.54 | 0.232 | 11.3 | 0.784 | 0.148 | -- | 0.192 | -- | 0.166 | 18.9 | -- | -- | -- | -- |
| 24.64 | 0.232 | 11.3 | 0.78 | 0.149 | -- | -- | -- | 0.167 | 18.8 | -- | -- | -- | -- |
| 15.55 | 0.184 | 11.3 | 0.989 | -- | -0.569 | -- | -- | 0.303 | -- | 20.25 | 1389 | -- | -- |
| 37.16 | 0.284 | 11.3 | -- | 0.145 | -0.303 | -- | -- | 0.134 | 20 | 22.3 | 1255 | -- | -- |
| 25.8 | 0.237 | 11.3 | 0.777 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 40.69 | 0.298 | 11.4 | -- | 0.141 | -- | -- | -- | 0.0798 | 19.1 | -- | -- | -- | -- |
| 38.2 | 0.288 | 11.3 | -- | -- | -0.299 | -- | -- | 0.132 | -- | 22.35 | 1337 | -- | -- |
| 41.73 | 0.302 | 11.3 | -- | -- | -- | -- | -- | 0.0776 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 4 | 14.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 14 | 14.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 34 | 14.22 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 82 | 14.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 103 | 14.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 164 | 14.37 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 181 | 14.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 203 | 14.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 214 | 14.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 459 | 14.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 21 |
| 665 | 14.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 11 |
| 902 | 14.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 904 | 14.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 982 | 14.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |